Oreochromis aureus (blue tilapia): 116312734
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Entry
116312734 CDS
T07295
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116312734 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116312734 (cpsf2)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116312734 (cpsf2)
U7-dependent histone pre-mRNA processing factors
116312734 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
116312734
NCBI-ProteinID:
XP_031586059
Ensembl:
ENSOABG00000018309
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Position
LG15:complement(15192999..15202233)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEETALCYLLQVDEFRFLLDCGWDENFSMEIIDVMKRHVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLESLSRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVKKRVKLEGKELEEYLEKEKLKKETAKKLEQAKEVDVDSS
DESDMDDDLDQSAVVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSTESLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVILEEGVKDEAEESE
LAMDIAPDLGTDPVNIAVAAQRAMKNLFGEDEKEFSEESDVIPTLEPLPPNETPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagccgtgtcaggggttcaggaggagactgccctttgt
tacctgctgcaggtggatgaattccgcttcctcttggactgcggctgggatgagaacttc
tccatggaaatcatagatgttatgaagagacatgttcatcaggtcgacgctgtgctgctc
tcccatcccgaccccatacacttgggagccctgccatacgctgtgggcaaactggggctg
aactgtactatctatgccacaattcctgtctacaagatggggcagatgttcatgtacgat
ctgtatcagtcccgaaacaacagtgaagattttacactgttcactcttgatgatgtggat
gctgcttttgataagatccagcagctgaagtactctcagattgtcaatttgaaaggaaaa
gggcacggtctttccattactcctcttccagccggtcacatgattggaggcactatttgg
aaaattgtgaaggatggggaggaagagattgtttacgccgtggactttaaccacaagaga
gaaatccacctcaatggctgctcattggagagcctcagccgtccatccttacttattaca
gactccttcaatgcggcgtatgtacaaccacgtcgcaagcaaagagatgagcagctactt
accaatgtgatggagaccctgcgtggtgatggcaatgtccttattgccgtcgatacagct
gggcgtgtgctggaactggctcagctcctggaccagatttggaggacgaaggatgctggg
ctcggagcttacccactcgctctgcttaacaatgttagctacaatgtagtggagttctca
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagaggaac
aacccgttccaattccgacatttgaccctgtgccacagtctggcagacctggcccgtgta
cccagccccaaggtggtgctctgcagccaaccggaccttgagtcagggttttctcgagaa
ctttttatccagtggtgtcaaaatgcaaaaaattccatcatcctgacgtaccgcaccaca
cctggaaccttagctcgctacctcatcgacaaccctggagaaaagatgctggatctggag
gtcaagaagagagtaaaactcgaaggcaaggagctggaagaatacctggaaaaggagaaa
cttaagaaagaaactgctaaaaaacttgaacaagcaaaagaggtggatgtggactccagc
gatgagagcgatatggatgatgatctggatcagtcggctgtagtaaaaaccaaacaccac
gatttgatgatgaagggcgagggcagccgtaaaggcagtttcttcaaacaggccaaaaag
tcatatccaatgttccccacacacgaggagagaatcaaatgggacgagtatggagaaatc
atcaggctagaggagtttctggttcctgaattgcaagccacagaggaggagaagagcaaa
ttagaatctggtttgaccaatggagatgaacctatggaccaggatctgtctgtagtcccc
acaaaatgcatctcaagcacagaaagtcttgaaataagagcaagggtcacgtacatagac
tacgagggtcgctctgacggggactccataaagaagattatcaatcagatgaagcccaga
cagctggtgattgttcgtgggccaccagaagccagtctggacctggcagagtcctgcaag
gcttttagcaaggacatcaaagtttacacgcctaaactgcaggaaactgtggatgccact
agtgaaacccacatctaccaggtgcggttaaaagactccttggtgagttctctgcagttc
tgcaaggccaaagacacggagctagcgtggattgatggtgtgctggacatgcgtgtagtg
aaggtggataccggtgtgatactggaggagggtgtgaaagacgaggcggaagaaagcgag
ctggctatggacatcgcccccgatcttggcactgaccccgtcaacatagcagtcgcggca
cagcgagccatgaagaacttgttcggagaggatgagaaggagttttccgaagagagtgat
gtcattcccacgctggaaccactgccaccaaacgagactccagggcatcagtcggtgttc
atcaacgagcctcgtctgtctgacttcaagcaagtcttgctgagagagggcatccaggcc
gagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcagaacggaggcc
ggacgcattggcctggaaggctgcctgtgtgacgactattataagatccgggagctgctg
tatcagcagtacgctgttgtatag
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