Oreochromis aureus (blue tilapia): 116314169
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Entry
116314169 CDS
T07295
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116314169 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oau03400
]
116314169 (msh6)
DNA repair and recombination proteins [BR:
oau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116314169 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
116314169
NCBI-ProteinID:
XP_031587952
Ensembl:
ENSOABG00000011850
LinkDB
All DBs
Position
LG13:13799748..13809070
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AA seq
1381 aa
AA seq
DB search
MAKQSSLLNFFTKSPPLVAKPKPSPSPAEADLPSSVEKSNSSPKEQAQQTPQQTKDTNKA
KKESKSKPASGGFKKLFGDKAQTTKESSPPCLFSAGALVWAKMEGHPWWPCMVVPQPLTG
QQMRGHGRDQRIHVHFFDEPPTRGWVSSNRVREYQGSDSSDAKPGGVYFCGKPLIRRAME
LADGVMFDSPEKRLKMPLCTDPSDVEEEEEDEEMELDSLVVTDEEGSDEYDNKSEALKPF
KVSASLFCALMEKGSKAKRRRIIAASDSDGSDEDFKPEHAASSSEDEEEGGGESCEEKEE
STEKSDVESPIKPAKRKRPAEKSAKTKAKTSTAPSVTPKSIPAAVATDTKSRLSAFSAPE
SFESQANGSGSTAGATVWDHEKLEWLQDGKRKDGKRRRQTDDDYDPSTLYVPNDFMNEIS
PGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNEMGLTFMKGTWAHSGFPEIGFG
RFSDVLVQKGYKVARVEQTETPEMMEARCKTMLKPTKFDRVVRREVCRIITRGTQTYSVL
DGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGCFHVGQFSDDRHCSRLRTLI
AHYAPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFKEA
TGKEQGTGSSFLPALLKEMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDQELLSM
ANFEEYVPVDVEMEKAAGPASFFAKTRQRMVLDGVTLVNLEIFQNGSGGTEGTLLERLDT
CSTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERLLSK
IHSIGTPLKSQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQDIISLFAPVSGEFHS
TLLCQVISLNSEKNGLFPDLSGELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALTGIK
NCERELQDYLDRQKKRLGCKSMSFWGTGKNRYQMEVPDSVSERNVPEEYELKSTKKGWKR
YVTKETERMFSELQGFEEKRDAALKDCMRRLFYNFDKNYSDWKTAVECMAVLDVLLALSR
YSQGSDGPMARPEVVLPEDDAQVAPFIDLKGSRHPCVTKTFFGDDFIPNDIFIGCPGTGE
NGEDDSLASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYIPAESLRFTPVDRVFTRLGA
SDRIMAGESTFFVELSETSSILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKI
CCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYG
FNAARLANLPEEVIQSGHRKAREFEKSTVSLRLFKKLCQFAEDAAPDSTRFTSLIQLLST
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcgcttttaaatttcttcaccaagtctccgccgctagtcgccaaa
ccgaagccgagtccctccccggcggaggcagacctgccttcctctgtagagaagtccaac
tcctctccgaaagagcaagctcaacagactccgcagcagacaaaagacaccaacaaagct
aagaaggaaagtaagtccaagccagcgagcggaggattcaagaaactgtttggcgacaag
gcccaaacaaccaaagaaagcagccctccatgcttattcagtgctggtgcccttgtgtgg
gcaaaaatggaagggcacccctggtggccgtgcatggtggtaccccagcctctgactggg
cagcagatgaggggccatggtcgtgaccagcgcatacatgttcatttctttgatgaacct
ccaacaagaggatgggtcagctctaatagagtcagagagtaccaaggctctgacagcagt
gatgctaaacctggaggagtctacttctgtggcaaacctttaattcgtcgtgcaatggag
ctggctgatggagttatgtttgacagcccagaaaaaagattaaagatgcctctctgcacg
gacccatctgatgtagaagaggaggaggaggatgaagaaatggagcttgacagcttagta
gtgactgatgaagagggcagtgatgagtatgacaacaaaagcgaagccctgaagccattc
aaagtcagtgcaagtttattctgtgcattaatggaaaaaggaagcaaagccaagcgccgt
cgcattattgcggcctcagatagtgacggatcagatgaggatttcaaaccagaacacgct
gcgtccagcagtgaggatgaagaggaaggagggggggaaagctgtgaagagaaagaagag
agcaccgaaaagtcagacgtggaaagccccatcaagcctgccaagcgcaaacgtcctgca
gaaaagtcagctaaaacaaaagcaaagacatctactgctccatctgttacgcctaaaagc
attccagctgcagttgcgactgacacaaaatctcgtttgtcagccttctctgctcccgag
agctttgagagccaggcgaatggatcaggctccactgcaggggcaacagtttgggatcat
gagaaactggagtggttgcaggacggcaagagaaaagacggcaaacggcggcgacagaca
gatgatgactatgatcctagcaccttgtatgtgccaaatgactttatgaatgaaatcagt
cctggtatgcgtcggtggtggcagctcaaatctgagatgtttgatacagtgattttctac
aaggtgggaaagttttatgagctctaccacatggatgctgtgattggagtcaacgagatg
ggactgacattcatgaaggggacttgggcgcactctggttttccagagattggctttgga
cgtttctcagatgtactggtgcagaaaggctacaaggtggctcgtgtggagcagacagag
accccagagatgatggaagcgcgctgtaagacgatgctcaagcccactaaatttgaccgt
gtagtgagaagagaagtgtgcaggattatcacacgtggtacccaaacctacagtgtgttg
gatggtgctccttcagagagccagagcaagttcctccttagtttgaaagaaaaggctgaa
gaagaaagctccggccgctgccgcacatatggagtctgttttgtagatacatcagtgggt
tgttttcatgttggtcagttctcagatgatcgtcactgctcacgcctgcgtaccctcata
gcacactatgcccccgctgaggtgctctttgagaaaggaaacccatctgttgaaactcgc
aaaatactcaaagcctctctgtcctctgctctgcaggaaggacttaatgcaggaacacag
ttctgggatgctcagaagactctgaaaaccctctcagaggaagattattttaaagaggca
actggcaaggagcaggggactgggagcagctttctccccgctcttctaaaagagatgaca
tctgagagtgattcactgtgccttactcctaaggagggctatgaactagcactgtcagct
ttgggtggatgcattttctacctgaagaaatgcttggtggaccaagagctgctctccatg
gctaactttgaagaatatgtcccagttgatgttgagatggagaaagctgcaggacctgcc
agtttctttgccaagactcgtcagcgtatggtgcttgatggagtgactctggtaaacttg
gaaatctttcagaatgggtcaggaggaacagaagggacactgctggagcgtttggacacc
tgctctactccgtttggaaagaggcttctgaagcagtggctctgcgctcctctgtgtaac
cccacatctatcagggacagattggatgcagtggaggacctgatgggagctcaagcccag
gctactgaggtttcagaccttctaaaaaaacttccagatctagagcgcctgctgagcaaa
atccacagtatcgggacacctctgaagagccaggaccaccctgacagcagagcagttctc
tatgaggaagtgacctacagcaagcgcaagatagcagacttcctctcagcactggaaggt
ttcaaaacgatgcaggacatcatttctctctttgctccagtttcaggcgagtttcattcc
acgttgctttgtcaagttatcagcctcaatagcgaaaagaacggcctctttcccgacctc
tctggtgaactcaaacgctgggacactgcctttgaccaccagaaagcccgcactactgga
gtaataacccccaaagctggctttgacccagagtacgaccaggctctgactggaatcaag
aactgtgaacgagagctgcaggattatctggacagacagaagaagagacttggctgtaaa
agcatgtccttctggggaactgggaagaaccgctatcagatggaggttcctgacagcgtc
tcagagaggaatgtccctgaagagtatgagttaaagtctacaaagaaaggctggaagcgt
tatgtgacaaaggagactgaacggatgttctcagagctgcaaggatttgaggagaagaga
gatgctgcactcaaagactgcatgaggaggctcttctataactttgacaagaactacagt
gactggaagactgctgtggagtgcatggcagtgcttgatgtgctgctggccttatctcgc
tacagccagggcagtgacgggcctatggccaggccagaggtcgtgcttcccgaggatgac
gcccaggttgcacccttcattgacctcaagggatcccgtcatccctgtgtcaccaagacc
ttttttggcgacgacttcattcctaatgacatcttcattggctgccctggcaccggtgaa
aatggtgaagatgacagtctggcctcttgcgtcctcgtcacagggccaaacatgggtgga
aagtctactctaatgagacaatgtggactcgtgatcattcttgcccagctgggttgctac
attccagctgagagcctccgcttcacgccagttgacagggtcttcactcggctgggcgcc
tcagatcgtatcatggctggagaaagcactttctttgtggagctgagtgagacttccagc
atcctgcaccatgccactaaacactcacttgtgcttctggatgaattaggaaggggcaca
gccacatatgatggcacagcaatcgccagcgctgttgtcaaggagcttgctgagaagatc
tgctgtcgcactctgttctctacacattaccactccctggtggaggactatgccaacaac
cctgccgtgcgtttgggccacatggcatgcatggtggagaatgagtgtgaggatccaagt
caagagaccatcactttcctctacaagttcataacgggtgcgtgtcctaagagttatgga
ttcaatgctgctcgactcgccaacctaccagaggaagttatccagtcaggacacaggaag
gccagagagtttgagaaaagcaccgtcagtctcagacttttcaagaagctgtgccagttc
gctgaggatgctgcaccggacagcacccgtttcacttccctcattcaactgctcagtact
ctgtaa
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