Oreochromis aureus (blue tilapia): 116317958
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Entry
116317958 CDS
T07295
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oau03016
]
116317958 (rtcb)
Enzymes [BR:
oau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116317958 (rtcb)
Transfer RNA biogenesis [BR:
oau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116317958 (rtcb)
Prokaryotic type
tRNA splicing ligases
116317958 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116317958
NCBI-ProteinID:
XP_031592717
Ensembl:
ENSOABG00000000573
LinkDB
All DBs
Position
LG17:complement(22517963..22521833)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINSTSWRIKKGFVPNMQVEGVFYVNEPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVNKSIGLPDVHSGYGFAIGNMAAFDMDDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttacaatgatgagctgcagtttctggataaaatcaactccacctcctgg
agaatcaaaaagggcttcgtccccaacatgcaggtggaaggagttttctacgtgaacgag
cctctggagaagctgatgttcgaggagcttcgtaatgcctgccgaggaggaggtgtgggc
gggttccttccagccatgaagcagattgggaatgtggcggcgctgccagggattgtgaac
aaatccatcggcctgccagatgtccactctgggtacggatttgctatcgggaacatggcg
gccttcgacatggacgaccccaatgccgtggtgtctccaggtggcgtgggctttgacata
aactgcggtgtccgcctgctgaggacaaacctggacgagggcgatgtccagccggtgaag
gagcagctcgctcagtcactgttcgaccacatccctgtgggagtcggctccaaaggcgtc
atcccgatgggagccaaggacctggaggaggcactggagatgggtgtggactggtctcta
agggagggctatgcctgggccgaggataaggagcactgcgaagagtacgggcgcatgctg
caggccgaccccaacaaggtgtcctccaaggccaagaagagaggcctgccgcagctcggc
actctgggagcaggaaaccactatgctgagatccaggtggtggatgagatctacaatgac
tacgccgccaagaagatgggcattgaccacaaaggccaggtgtgtgtgatgatccacagc
ggcagccgaggcctcgggcatcaggtcgccacagatgctctggttgccatggagaaggcg
atgaagcgtgacaagatcacagtgaacgatcgtcagctggcctgcgctcgaatcacctct
cctgaggggcaggattacctgaaaggcatggcagccgcaggaaactacgcctgggtcaac
cgctcctccatgaccttcctcaccagacaggccttctccaaagtgttcgctacgacgccg
gatgaccttgacatgcacgtcatctacgacgtctctcacaacatcgccaaagtggaggag
cacattgtggacgggaagcagaggacgctgctcgttcaccgcaaaggatccacgcgagcc
ttcccccctcaccaccccctcatccccgtcgactaccagctcacaggtcagccggtgctc
atcggtgggacgatggggacctgcagctacgtcctgacggggaccgagcagggcatgacg
gagacatttgggaccacctgtcatggagcgggccgagcgctctctcgagcaaagtcacgc
aggaacctggacttccaggacgtcctggacaaactagccgacatgggcatcgccatccgg
gtggcatcgcccaaactggtgatggaggaggctcctgaatcatacaaaaacgtgacagac
gtggtgaacacgtgtcacgaggctggcatcagcaagaaggcgatcaaactgaggccgatc
gctgtcatcaaaggatga
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