Oreochromis aureus (blue tilapia): 116318891
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Entry
116318891 CDS
T07295
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116318891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116318891
03036 Chromosome and associated proteins [BR:
oau03036
]
116318891
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116318891
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116318891
mRNA degradation factors
5'-3' decay
Decapping complex
116318891
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116318891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
116318891
NCBI-ProteinID:
XP_031593911
Ensembl:
ENSOABG00000001608
UniProt:
A0A668RJP4
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All DBs
Position
LG22:complement(27850662..27862469)
Genome browser
AA seq
487 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPAAVQPAPTTQVKTLGAPQKAGGASQDGGGIK
FGDDWKKSLQLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAVVMVPTRELALQMSQICIQL
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEYHSTSGDCDVEEVEE
KRQQDST
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaatgtgggcccggtcgtcatgggactgaataagcagaac
gggcagctcagagggcagaccaaaccagctgcagtccagccagcaccaacaactcaagta
aagactttgggtgctccccagaaagcaggaggagcctctcaggacggaggtggtattaag
tttggagatgactggaaaaagagcctacagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacgtccacaaaggggaatgagtttgaagattattgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctattcaggaggagagcatt
cccatcgccctgtctggacgggacattctggcccgagccaagaatggaacagggaaaagt
ggagcctatctcatcccactgctggaaaggatagacctgaaaaaggaccacatacaggcc
gttgtcatggtgcccactcgtgagctggcactacagatgagccagatctgcatccagctc
agcaaacacctgggaggagtcaaagtcatggccaccaccgggggcaccaacctgagagat
gacatcatgcgtctggatgagactgtgcatgtggtcatcgccacgcctggcaggatcctg
gacttgataaagaagggagtggcaaaggtggataaagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcattgaagatattattagtttcctg
gccaagaacagacagatcctgctctactctgcaaccttccccatcagtgtgcagaagttc
atggccaagcaccttcagaagccctatgagataaacctgatggaggagctgactctgaag
ggcattactcagtactatgcctacgtcacagagaggcagaaagttcactgcctcaacaca
ctcttctccaggcttcaaatcaaccagtcaatcatcttctgtaactccactcagagagtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccacgctaaa
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaat
ctggtgtgcactgatctgttcaccagaggaattgacattcaggcggtaaacgtggttatc
aacttcgacttcccgaagaacgccgagacttacctccatcgtattggaagatcagggcgg
tttggtcacctgggcttggccatcaacctgatcacatcggaggatcgcttcaacctgaag
gccattgaagaccagctggtgaccgacattaagcccattcccagcagcatcgacaagagc
ctctatgtggccgagtaccactcaactagcggggattgtgacgtggaggaggtcgaggag
aagcgccaacaggacagcacctaa
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