Oreochromis aureus (blue tilapia): 116319359
Help
Entry
116319359 CDS
T07295
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116319359 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116319359 (smarcd1)
03036 Chromosome and associated proteins [BR:
oau03036
]
116319359 (smarcd1)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116319359 (smarcd1)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116319359 (smarcd1)
PBAF complex
116319359 (smarcd1)
GBAF(ncBAF) complex
116319359 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
116319359
NCBI-ProteinID:
XP_031594519
Ensembl:
ENSOABG00000013126
LinkDB
All DBs
Position
LG5:complement(33821091..33839310)
Genome browser
AA seq
514 aa
AA seq
DB search
MAARGGFQSAPTGGGGAMGPGPPVPGAGPGMGPGTPSGRMGPSAAAQNHMYRSPMPGPGY
PRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHLISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcggcaccgacgggtggtggtggagcaatgggacct
ggaccaccggtaccgggtgcaggaccaggcatgggaccaggaacaccttctggaagaatg
ggaccatcggctgccgcgcagaaccacatgtaccgctcaccgatgcccgggcctgggtac
ccgagaccaggcatgcctccttccagtcgcatgacccctcagggaccagccatgggccct
ccaggatacggcaacagccccgtgtcccgtcctggcatgccaggtgtgatggatccgtct
cgtaagaggccggctcctcaacagattcagcaggttcagcaacaacagaaccgcaaccag
cacacaaagaagaagaaaatggctgataaaattctacctcagaggatcagggaactggtc
ccagagtctcaggcttacatggatctgctggcttttgagaggaagctggaccagaccatc
atgcgcaagaggctggacattcaggaggccctcaagaggccaattaagcaaaagagaaag
ctaaggatttttatctccaacaccttcaacccagcaaagcctgatgctgaggatggagag
ggcacagtggcatcatgggagctacgtgtcgaggggcgcctgctggaagatacagccgtg
tccaagtatgaagccacgaaacagaaaagaaagttctcctcattcttcaagtccttggtg
atcgagctggacaaagatctatacggtccagataatcaccttgtggaatggcataggact
gctacaacccaggagaccgatggtttccaggtgaagaggccaggtgatgtgggtgttcgt
tgcaccgtccttctcatgcttgattaccagccccctcagttcaagctggacccccgactg
gcccgtatgttgggtatccacacccagaccagacctgtcatcattcaggccctgtggcag
tacgtgaagacccacaaactccaggacccacatgagcgggagttcatcaactgtgacaaa
tacttgcagcagatctttgagactcagcgaatgaagttttctgagatcccacagcgcttg
catgcacttctcatgcccccagagcccatcatcatcaaccatctgatcagtgtggatcct
aatgaccaaaagaagactgcctgctatgacattgatgtggaggtggacgacacactgaag
acccagatgaactccttccttctctccacagccagccagcaggaaatagcagggctggac
aacaagatccatgaaaccattgagaccattaaccagctgaagacccagagggagttcatg
ttgagttttgccagggatcctcagggctttatcaacgactggctgcagtcccagtgcaga
gacctcaagaccatgacagatgtggtaggaaacccagaagaggagcgaagagcagagttt
tactaccagccgtgggctcaggaggccgtctgccgttacttctactccaaggtccagcag
aggcggcaggagctggagcaggcgctcggcatcaggaacacctaa
DBGET
integrated database retrieval system
