Oreochromis aureus (blue tilapia): 116320369
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Entry
116320369 CDS
T07295
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03022
Basal transcription factors
oau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116320369 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
116320369 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116320369 (ercc2)
03036 Chromosome and associated proteins [BR:
oau03036
]
116320369 (ercc2)
03400 DNA repair and recombination proteins [BR:
oau03400
]
116320369 (ercc2)
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116320369 (ercc2)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116320369 (ercc2)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116320369 (ercc2)
DNA repair and recombination proteins [BR:
oau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116320369 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116320369
NCBI-ProteinID:
XP_039478848
Ensembl:
ENSOABG00000025249
LinkDB
All DBs
Position
LG14:5511697..5520407
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYTKETGESNNFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPNLPVCRFYEEFDSVGRQVPLPAGIYNLDDL
KAFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLANPVLPDEILQEAVPGSIRTAEHFVGFMRRFLEYLKSRLRVQHVVQESAPQFLKD
VFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVLMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKITQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacattgagggtctgctggtgtattttccctatgactacatctaccccgag
cagtactcctacatgctggagctgaagaggacgctggatgccaagggtcatggagtcttg
gagatgccgtcaggaacagggaagaccatctctctactgtccctcattgtggcctaccaa
agggctttccctctggaggtcaccaagttaatttactgctctagaacagttccagagatt
gagaaggttgtggaggagctgaggaagctgatggagttttacactaaagaaacaggagag
agcaacaacttcctggctctcgctctttcctccaggaagaacctctgcatccaccctgag
gtgagctctctgcgcttcggtaaggaagtcgatgggaagtgccacagtctgacagcatcg
tacatccgcgcacaacatcacagcaaccccaacctgcccgtctgtcgcttctacgaggag
ttcgattcagtcggccgacaggtgcctcttcctgctggcatctacaaccttgatgacctc
aaggcctttggcaggaggaagggctggtgtccttactatctggctcgctattcaatcctg
catgccaacattgtggtgtacagctaccactacctgctggaccccaagatagctgatctg
gtgtctaaagagctggcaaagaaatccgtagtggtgtttgatgaggctcataatatcgac
aacgtgtgcatcgactccatgagcgtaaacatcaccaggcgaacgctggaccgctgtcag
aacaacgtggacactctccagaacaccatacacaagataaaggagacggatgctgctaag
ctgagggaggagtacaggcgcttggtggaggggctgaaggaagccaatgtggcgagagaa
accgacatctacctcgcaaatccggtgttgcctgatgaaatccttcaagaggcggtgcct
ggctctattcgtacagccgagcactttgtaggtttcatgagacgcttcctggagtatctg
aagtctcgtctgagggtccaacacgtcgtacaggagagcgcgcctcagttccttaaagac
gtcttcgacaaagtctgcatcgaccgcaagcctctcaggttttgtgcagagcggttgcag
tcgttgcttcgaactcttgagatcgccgacatcgcagacttctcagctgttactctcatc
tcgaacttcgccactctcgtcagcacctacagccaaggcttcaccatcatcatcgagccc
tttgaagacagaactccgaccattgccaaccccgtgctgcatttcagctgcatggacccg
tctatagccatcaaaccagttttccaaagattccagtcagtcgtcatcacctcagggaca
ctttcccccctggacatctatccccgcatccttgactttcgcccggttaccatggcgtcc
ttcaccatgacactggcgcgcacctgcctctgccctctgattgttggcagaggaaacgac
caggtggccctgagctccaagtttgagaccagagaagattttgctgtgattcggaattat
ggtaacctgcttctggagatgtctgcgatcgttcctgatgggattgtggcgtttttcacc
agctacgtgtacatggagaacatcgtggcgtcctggtatgaacagggtatcctggagaat
atccagagaaacaagctgatcttcatcgagactcaggatgctgcagagacgagcatggcc
ctggagaaataccaagaggcgtgtgagaacggccgaggagccatccttctgtctgtggcc
agaggaaaagtgtctgaagggatagatttcgtgcaccattatggccgtgctgtcctcatg
tttggagtgccgtatgtttatacgcagagtcgcatcttaaaggctcggctggagtacctt
cgggatcagtttcagatcagggagaacgactttctgacgtttgatgccatgcgccacgcg
gctcagtgcgtaggcagagccatccgaggcaaaactgactatggactcatgatttttgct
gacaagcgttacgcacgagcagacaaacgtgggaagctacctcgctggattcaggagcac
atcaacgacggcagtctgaacctcaccgtggacgaggccgtgcagctttccaagcacttc
ctgcggcagatggctcagcctttcagacaggaggaccagttgggtttgtctctgctgact
ctcgagcagctggagtcggaggaaatgctgcagaaaatcactcagattgctcatcagacc
tga
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integrated database retrieval system
