KEGG   Oreochromis aureus (blue tilapia): 116322022
Entry
116322022         CDS       T07295                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oau  Oreochromis aureus (blue tilapia)
Pathway
oau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116322022 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oau03041]
    116322022 (prpf4)
Spliceosome [BR:oau03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    116322022 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML WDR90_beta-prop_4th PRP4 WD40_MABP1-WDR62_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_WDR11_1st WD40_like Nbas_N DUF7239 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 116322022
NCBI-ProteinID: XP_031597855
Ensembl: ENSOABG00000022498
LinkDB
Position
LG7:complement(27580898..27592178)
AA seq 510 aa
MSDEEDVAPAVKKSRVFYGSLEEKERERLSANVASSTATGSDAVRVGIEAGNINISSGET
LEIEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSQDECQQTWYHEGSPSLKDARLWLARYSLPRAMRR
LEAARAQKEVTEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQVGVSLSQSDVSLASCAADGTVKLWNLES
DEPVADIEGHSERVSRVSWHPSGRFLGTTCYDYSWRLWDLEVQEEILHQEGHSKGVHDLT
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHE
GKVMGVDMSPDGKLIATCSYDRTFKLWLSE
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtccgatgaggaggatgtggctccggccgtgaagaagagcagagttttctatggaagc
ctggaggagaaagagcgggagcgtctgagcgctaatgtggcgagcagcacagcaacagga
agcgatgcagtcagggtgggaattgaggcgggaaacatcaacatctcatcaggggagact
ctggagattgaagagcgggtcagtgagcggcagcaggaagcgcttgctgagtttgagcga
cggcgacgagcccgacagatcaccgtgtccactgatgacgctgaggtgaaagctggcctc
cgtgcgctcggggagccaatcacgttgtttggagagggaccagctgaccgccgcgaaagg
ctgcgcagcgtgctgtccgtggtcggtccagatgctctgaagaaatccaggaaggacgaa
gagcgagcgaagaggtcgcaggatgagtgccagcagacatggtaccacgaaggctccccc
tccctaaaggatgctcggctctggttggccagatattctcttccccgagcaatgaggcgc
ctggaggctgcacgcgctcagaaggaagttaccgaggcaaccaaaacaatccgacaacaa
gagctgcacaagagcctgaggaatctgaacaacttctgcagtcagattggggacgatcga
ccaatcagcttctgccacttcagccccgattccaaaatgctggctacagcctcctggagc
ggtctgtgtaagctatggtccgtccccgactgcaacctgattcggacactcagaggtcac
aacaccaatgtgggcgccgtcgtcttccgcccccaggtcggagtttctcttagccaatca
gatgtcagcttggcctcgtgtgccgctgatggcacagtgaagctgtggaacctggaaagt
gatgagccagtggcagacattgaaggtcacagcgagcgagtttctcgggtgtcttggcat
ccatcaggacggttcctgggaacaacctgctacgattactcgtggcgtctctgggatctg
gaggttcaggaggaaatcctccatcaggaaggtcacagcaaaggtgtccacgacctgacc
tttcaccctgatggttctctggctgctacaggaggcctggatgcgtttggcagggtgtgg
gacctccggacgggacgctgcgtggtgttcctcgagggtcacctgaaggagatctacagc
ctgcacttttcccccaacgggtatcatctggcaacaggaagtggagacaacacctgtaag
gtctgggagctgagaaaccggaagtgtctttacacagtccccgcccaccagaacctgctg
tctgccgtccgctttcaacctacagacgggcacttccttttaacgggtgcgtacgacaac
acggcgaaggtctggagtcatccgggttggatgccgctgaagacacttgccgggcacgag
ggcaaggtgatgggcgtcgacatgtcacctgatgggaaactcatcgccacctgttcctac
gatcggaccttcaaactgtggctgtcggagtga

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