Oreochromis aureus (blue tilapia): 116322150
Help
Entry
116322150 CDS
T07295
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03018
RNA degradation
oau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116322150 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
116322150 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116322150 (lsm5)
03041 Spliceosome [BR:
oau03041
]
116322150 (lsm5)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116322150 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
116322150 (lsm5)
Spliceosome [BR:
oau03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116322150 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
116322150
NCBI-ProteinID:
XP_031598022
Ensembl:
ENSOABG00000001527
LinkDB
All DBs
Position
LG9
Genome browser
AA seq
88 aa
AA seq
DB search
MSATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEG
RRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctacaaacccgtcgcagctgctcccgctcgagcttgtggacaaatgtatcggc
tcccgaattcacatcgtcatgaaaactgacaaagaaattgtcggcaccttgctgggcttc
gatgacttcgtcaacatggtcctggaggatgtgacagaatttgaaatcacaccagagggg
aggaggataaccaagctggaccagatcctcctcaatgggaataacatcaccatgctcatc
cccggtggagaaggaccagaagtataa
DBGET
integrated database retrieval system
