KEGG   Oreochromis aureus (blue tilapia): 116323512
Entry
116323512         CDS       T07295                                 
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
  KO
K10897  partner and localizer of BRCA2
Organism
oau  Oreochromis aureus (blue tilapia)
Pathway
oau03440  Homologous recombination
oau03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:oau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    116323512 (palb2)
   03460 Fanconi anemia pathway
    116323512 (palb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oau03400]
    116323512 (palb2)
DNA repair and recombination proteins [BR:oau03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     116323512 (palb2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     116323512 (palb2)
SSDB
Motif
Pfam: PALB2_WD40
Other DBs
NCBI-GeneID: 116323512
NCBI-ProteinID: XP_031599720
Ensembl: ENSOABG00000009699
LinkDB
Position
LG6:complement(12614977..12623413)
AA seq 1348 aa
METTVGDIQHCEEQLRSTLHSDDKEKLRRKLAELQREYLRTAQRLQRAERLEAVQRHVRS
RITEQNHLEQRDTEAASNLHLNPSSLMLNSSSDTAQGLTQSQRHTEGPAESENSRRNQVI
RFSLPSDACPQTPDLSHAEPTGYRAGSSLRLRSRRSRLRWESRSTENNEKGQEQGEGMKS
AKRAGEEEKLTSDGADAVNESEELFSGTDSESPSLLLTHWSTHGCTESGDIQGKDMPRSQ
EQKEKDAEEKGEGEKESESLLLTTQTENRGHDGTQNKTRKEGARGEDGGNSRGRNEENIR
KDTEQNVGDKTESKKRHDNSVEVKEEKNEFTGGGKSGSLLDSCTLVEGLLFPVEYYVRTT
RRMTFSQSQPDMQAVIESQLSRGRHRRSRGRAKGQNRNTQSSELSQPHTQTDFSSLATAS
GDPNKPSQAVASVCASAEHSQNSGEISACQMDSSFSPTSARPARGRRRKRDTGRGRSQTG
RASLSLNTHQSVGEQTSDDPQPTDIPASSYQSLQGADGPEPCPTPGETDPATDGPQHVPT
HITDPPLTSGVNGASYSSASGHPKNVYEIFMKRNNKANRSPHMNQSTSSWRSLLLPSSLS
PAQTSLLRLPSLLSGPLMNLDTHQDFHLPDDQFASLKLLKLRQVTGESAVEPFSSPSYNT
RSSWRRFDFRCSGSDPATPLPLPLSLTPTIANSPGHNEEHLAATQSINIQSVSEEHRLTD
TVMKRHFTEEQQTENGLAEAHSSSTDPVGQKCANVCMDAGQETVIVNSRTELQTLMNSAD
RPVCTENDDVINHPVVHASEDLRCINHSEEDKVTTELVYFESPLQEVSSSSCTDIQACNE
TNPPEEPLKSPNRLTENQTKSSHGVISQLMLSSPLASAPSLFITPHLPSCTLSTSPKLPS
LGLTPHPVTCSLPLPSSPSAPCLTLPPPYSPSRQALSPPPLSPCPSITYLPPSPPAFSPS
GESHPSSKPPVRANQHHTVEATTPLSPSGHQLEDSAGQLDLRTEETKEELVIRHMHTLRA
AAGGILVDACCFPGSSDTLCVAAAGKWAVCLWSQASASEWKLIHTWTFSEPVISVFHVPD
AAGLICVTLGQLEIREVRVLSCSSLMQILLCEGILQAAIGVSRSRVVTTSHSATGSTLQV
FTLSDYSSPSSQPLVSPGVCVGALAPVDGLPDALIGTDEGGHLFVWNLKTGQLLCRVLFG
EGFSHTACLRGYSSCGVLFVLLQHQFLSSLEDEEKEGKIKDPKTALFSLVAINPLSGKSI
HATQLYPPENWAGRLCEADVSGSGVVGLSQNGCACVWELGHPGASRMVWAPESEGWQLAR
WGGLNTLVTGHHNGDVTLYCYSQNSRCC
NT seq 4047 nt   +upstreamnt  +downstreamnt
atggagaccactgtgggagatattcagcactgtgaggagcagctgagatctacgctgcat
tctgatgataaggagaagcttcgtaggaagttggctgaattacaaagggaatatctcagg
acagcccagagactgcagcgtgccgagcgcttggaggcagtacagagacatgtgaggagc
aggatcactgaacaaaaccacctggagcaaagagacacggaggctgcatcaaatctccat
ctcaatccttcttcattgatgctgaacagcagcagtgacacagctcagggcttaactcag
agccagagacacactgaaggtccagctgaatctgaaaactcaaggagaaaccaggtgatc
aggttctcacttccatctgatgcttgcccgcaaacgccagatctcagccatgctgaacct
acaggttatagagcaggttcttccctgcgcctcaggtcacgacgcagccgcctacgctgg
gaaagtaggagcacagagaacaatgaaaagggacaggagcagggtgaggggatgaaaagt
gccaaaagagcaggagaggaggagaaactcacatcagatggagcagatgctgtaaatgaa
agtgaagagcttttttctggtacagattctgagtctccctctctgctgcttacacactgg
agcacacatggatgcactgaatcaggagatattcagggaaaagacatgcctagatcccaa
gaacaaaaggaaaaagatgctgaggaaaaaggtgaaggggagaaagaatccgagtcattg
ttgctcacaacacaaactgaaaacagggggcacgatggcacacaaaacaaaacaagaaaa
gaaggggcgagaggagaagatggtggaaatagtagaggacggaatgaagagaacattaga
aaagacactgaacaaaatgtaggggacaaaacagaaagtaaaaaaaggcatgataatagt
gtggaagtaaaagaggaaaagaatgagtttactggaggtggaaaaagtgggagcctgctg
gactcctgtacattagtggaggggctacttttcccagtggaatactacgttcgaaccaca
agacgaatgacattttcacagagccagcctgacatgcaggctgtaatagagtcccagctg
agcaggggacgacatcgcaggagccgaggccgtgccaaaggacagaacaggaacacacag
agcagcgaactttcacagccgcacactcagacagatttctcctctctagcaactgcatct
ggggaccctaacaaaccatctcaggctgttgcatctgtgtgtgcatctgctgaacacagc
cagaactctggtgagatttcagcttgtcagatggactctagtttttctcccacgtctgct
cgtccagcacgaggccggaggaggaagagagacacagggagagggagatctcagaccgga
cgagcctctcttagtttgaacacacatcagtcagtaggtgagcaaacctcagatgatccc
caacctacagacattccagcctcttcctatcagtctctccaaggagctgatggaccagag
ccctgcccaaccccaggagaaaccgacccagcaacagatggaccacagcacgtgcccaca
cacatcactgatcctccgcttacttctggagttaatggagcttcttacagctctgcctct
ggacatccaaagaatgtctatgaaatctttatgaagaggaacaacaaggctaacagatcc
ccacacatgaaccaaagtacatcgagctggcgatcgctcctcttgccctcctccttgtca
ccggctcaaacgtctctacttcgtcttccctctctgttgtctggcccgctgatgaacttg
gacacccaccaagattttcatctcccagatgaccagtttgcctccctgaagctcctcaag
cttcgccaagtcactggagaatctgcagttgaacctttctcatccccatcttacaacaca
cgcagcagctggcgccgctttgactttcgatgcagcggcagtgatccagcgacacctctt
cctctcccgctaagcctcacacctacaattgcaaattcaccaggtcataatgaagaacac
ctggctgctacccagtccataaacatccagagtgtatcagaagaacacaggcttacagat
acagtgatgaagcggcacttcactgaagagcagcagactgaaaacggcttggcagaggct
cactctagctcaacagatccagtggggcaaaagtgtgctaatgtctgtatggatgcaggg
caggaaactgtgattgtgaactctcgtactgaacttcagactctcatgaactctgcagac
agaccagtctgcacagagaatgatgatgtcatcaatcacccagtggtccatgcttcagag
gatctgaggtgtataaatcacagtgaagaagataaagttaccactgagctggtttacttt
gagtcacctctacaggaagtctcctccagcagctgcactgatatacaagcatgtaatgaa
acaaaccctccagaagaacctctgaagtctccaaacagactcactgaaaatcagaccaaa
tcttcacacggtgtcatctctcagctcatgttgagttcccctctggcttcagcaccctcc
ctctttataaccccacacctgccttcatgcaccctaagtaccagcccaaaactaccctcc
ctaggtctcaccccccaccctgtcacctgcagcctccctctgccctcctccccctctgcc
ccttgtctcaccctgcctccaccatacagcccttccagacaggctctctctcctccaccc
ctgtctccctgtccctccatcacttacctccctcctagcccccctgctttctctccatct
ggagagagccacccttcatctaagccaccggttagggccaatcagcatcacacagttgaa
gccactactcccctgagtccctctggccatcagttggaggactcagctgggcagttggac
ctgagaacagaggaaacgaaagaagaacttgttattagacacatgcacacattgagggct
gcagcaggaggcattctggtagatgcttgctgttttcctggatcctcagacactttgtgt
gtagcagcagcaggaaagtgggcagtgtgcctttggagtcaagcttcagcatctgaatgg
aaattaatacacacctggacctttagtgagccagtgatcagtgtgtttcatgtcccggat
gctgctgggctgatctgtgtgactctgggtcagctggaaatcagagaagtgagggtgctg
tcatgctccagcctcatgcaaatattgctctgtgaggggattcttcaggcagcgattggt
gtgtcccggtccagagtggtgaccacctcccactcagccacaggttccactctgcaggtg
tttacgctgtcagactacagctcaccgagctctcagcctctggtatctccaggtgtttgc
gtgggagcgcttgcaccagttgatggacttcctgatgctctcattggtacagatgaaggc
ggacacctttttgtctggaatctaaagactggacagctgctgtgcagagtcctctttgga
gagggtttttctcacacagcctgcctcagaggatattcctcctgtggagtgttgtttgtc
ctgctgcagcatcagtttctaagctctttagaagacgaagaaaaagaaggaaaaataaaa
gatcctaagactgccttgttctccttggtcgccattaaccctctaagtggaaaatccatc
catgctactcagctgtacccaccggaaaactgggctggcaggctgtgtgaagccgacgtc
agtggctccggcgtggtgggcctgagtcagaatggctgcgcctgtgtgtgggagctcggg
cacccgggggcttcgaggatggtatgggctccagagagtgaaggctggcagctggctcga
tgggggggattaaacacgctggtgactggacatcacaatggagacgtgactttatactgc
tacagtcagaactcgcgctgctgctaa

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