KEGG   Oreochromis aureus (blue tilapia): 116323740
Entry
116323740         CDS       T07295                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
oau  Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:oau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oau03400]
    116323740 (mdc1)
DNA repair and recombination proteins [BR:oau03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    116323740 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 BRCT FHA
Other DBs
NCBI-GeneID: 116323740
NCBI-ProteinID: XP_031600016
Ensembl: ENSOABG00000020258
LinkDB
Position
LG11:23485720..23498769
AA seq 2060 aa
MDATQLISDSILESDEEDNEDEIENKRGRPLAKLCILKNKHIPEAEFPLFLGDNVLGRDP
NSCTVPLLASSVSKQHATICLCVYRRHACRSEVDMEALVWDLGSMNGTRKGRLKLTPNVR
YALSEGDSLVVADIPCQFVSCGVDSSQGDASSPLRQNSGVKTKLPDASGEKGDDTSIDSK
KCVNGGAETPVRASCLTFEQTPHQPQGTLVPESDSDSDSETGVRGERRRKTLVSDSDSHK
SSPISSSFLSPPNKVVPESDNESPITVSSSSKNKPNRHDSYTTQETDVDVGRQQLEKKKV
VAFVEDSEEEEERAVQVGTKSLKGGCHMPVEKESNASLTEDDELSTPAVSTDAIPAFNMD
SDTDVEGEDEEVASAGPVTLTTNQQVDQPPKTAQFHMDSDTDIDEDEDASGKAPKALPSS
DENAKTPHAVSVLPPEGVTMDSDTDVDDDAVVSDAATKAGPTVCQSAHTADSAFSVQPED
FHLHSDTDVDEDEEEEAKNKTDETPNKSDIKLTALKSAPVAPDSLQIESDTDDEALPVPA
TSKPSVVAAVADSRPTAGADADLEILSDSDTDVEDASLLAIPVGVTTMSASPRPTLKASR
ADSDADTDVDESSVPPAGDEAKPADVKVDGDTEDKKSDIGEGEDQVPGLHGENTPGLLAP
LLQNCSTPVQMSDEEVEDMETQAFVSPSSGSLRRAAVPAVRPVVLSPCSDIQEEEDFAVA
ETQSFTIQSRDRESSEEPTQAFVLESSCDNKNDQSTKGESFQLGLSDSSHLQCPDQALAM
ENTQSFVSVERGVNLEDTQAYAAMSAADRSSAENDANLEATQDYVEDEEPERYQVDVALE
ATQAYVAEPYSHAEDDTDDDTCETQPSDFTASSTLAIAETQPMLPIAGEEDLAAENPVCS
VQQIQPRSLKEDGAKAAQPQEKGFSDAQSVTETQPMCTSDNEASDDEGSFPAQRNRTAKP
LPPEEAQTQDLTCSELSLSETQPMATCDDDDEDSMPGPRKRKAKQLHLEEEETQPVTDSE
LSTAETQPIAACDDDDEDSMPGPRKRKAKQLQPEEETQPLASSEGSALETQPLSTNEGQQ
SDEEDVIACPRKRKAKPLQLEEEQTQPLASADVETPAVVTGKYDVKDSIPGPRKRKAKQM
KLEEETQPVDNSIITPVETRPLTTKTRLSSSEESEAGTNGACVRNLRVTRAKPREEEDQA
ECPGPSRRQTRGRSGKSLSDGDNNKEMVKQARGKKITKQQKHDGEEEDEVPVRERNKRAV
NKSLINQQEDGKSREEEDGADLGQEREENDKERTTDEREKDEIERQLKEEKLETERRVNE
EQERLQAENAARAEREIKEKEEQEKIESERIEREERERLEREEKERLERERKEQEKEMAK
REEEERLEREQELQARLEREEKEMEEREKVKKEKEAQEKQLKELEEKKEEQDKSKTPSRG
RRTTRRTIASQSTAEPDQDSTVSTNDDFPARRTRSRSNSSNSVSSERSASSVHAQESKGR
GRGRGTRKTSETPQTPVARSSNRRTTVAAGAVEHEPDLSNSLTPEVSSCSVSSHNRGRGG
RQRGRARKTEHDPDSLPSVGQSQSDQHSSPARGRKGKKAESSSNEALHKNGKEDSQPATT
TRGRQQASAATDEEDQSKQEEACTSEESLPKRNVRGRGQRAVKSETVAKPVAPAVSDDDD
EAKDKRKATRDLEANTGADLSCSKGKERSSKMAEKDKEEVKGETNDEIPVSLQGKKRGRA
STAQAKKRTKESLSEVEEEREKMEGETVEKKVRGRQSAVSRKKKAELEESGTSLTATNQD
ANLEASEPQTPTSNASRKRQAPENFSPVAKSPRSSSASPAASGQLRIAGQAYKVLFTGVM
DEAGEKVLARLGGSMAKGVGDMNCLVTDKVRRTVKFLCALAKGIPIVTTDWLEKSGKAGS
FLPPSSFIVEDPEQEKKFNFSLHKSLRIASSQPLLKGYEVHVTRSVKPEPVHMKDIISSS
GATFLPKMPSSNKPNTVVISCEEDWPLCRLALSASLPVVTAEFILTGILQQKLDFQSHTL
SPSTANLQPAGGRGRGRRKT
NT seq 6183 nt   +upstreamnt  +downstreamnt
atggatgctactcagctgatcagtgactcaatcttggagtcagatgaggaagataatgaa
gacgagattgaaaataaaaggggacgaccgttggctaaactgtgcatcttgaaaaataaa
cacatacctgaggcagagtttcccctctttttgggtgataatgtgcttggccgtgacccc
aactcctgcactgtccccttgctggcgtcctcagtgtccaaacagcatgctactatctgc
ctttgtgtgtaccggagacatgcctgtcgcagtgaagtggacatggaagctttggtttgg
gacttagggagcatgaatgggacccgcaagggccgcttaaagctgactcctaatgtacgc
tatgccctcagtgaaggtgacagtttggtggtggcggacatcccgtgtcagtttgtcagc
tgtggcgtagactcttctcagggggacgcaagctctcctctgagacaaaattcaggggta
aagaccaagttgccagatgcctcgggagaaaagggagatgacacaagcatagacagcaag
aaatgtgtcaatggaggggcagagactcctgtcagagccagctgcctgacctttgagcaa
actccccatcagccacaggggaccttggtcccagaatctgactcagactcagacagcgaa
acaggagtaagaggagaaagaagacgaaagactctagtgtctgattctgactcccataaa
tccagccccatcagctcgtcattcttgagtcccccaaacaaagttgtccctgaaagtgac
aatgaaagccccatcacagtctcttcctcctctaaaaataaaccaaacagacatgacagc
tacaccacacaggagacagatgtagatgtggggcgacagcagttggagaaaaaaaaagta
gttgcatttgtggaggacagtgaagaggaggaagaaagagcagtgcaagtggggacaaag
tctctgaaagggggttgtcacatgccagtggaaaaggaaagcaatgccagtcttacagaa
gacgatgaattgtcaacaccagcagtctctacagatgcaatccctgcatttaacatggac
agtgacactgatgtggagggagaggacgaagaagtggcatcagcggggcctgtgaccttg
actacaaaccaacaagttgatcaacctccaaagacggcccagtttcacatggacagtgac
acagatatcgatgaggatgaggatgcttcaggtaaagctcccaaagctctgccttcctct
gatgagaacgccaaaactcctcatgctgtttcagttcttccgcctgaaggcgtcaccatg
gacagtgacactgatgtggacgatgatgcggtcgtgtcagacgctgccacaaaagcagga
ccaacagtatgtcagagtgcgcacacagcagactctgctttttcagtgcagccagaagat
tttcacctccacagtgacactgatgtagatgaggacgaagaggaagaagcaaaaaataaa
acagatgaaacacctaataaatcagatataaagcttacagctcttaaatctgctcctgtg
gctcctgacagcctgcagatagagagtgacacggatgacgaggctctccctgtccctgcc
accagtaaaccctcagtggttgctgctgttgcagattcacgccccactgcaggtgcagac
gctgatttggagattctctctgacagcgacacagatgtggaagatgcatctcttctggct
atacctgttggtgtcacaaccatgtcagcttctccgaggccaactttgaaagcttctcgg
gcagattctgatgcagatacagatgtggatgagtctagcgtgccccctgctggggatgag
gctaaaccagctgatgttaaagtcgacggcgatacagaagataagaagtcagatattgga
gaaggtgaggaccaggtgcccgggctgcacggggaaaatacacctgggttgctggctccc
cttctgcagaactgctccactcctgtgcagatgtcagatgaagaagtggaagacatggaa
actcaagccttcgtcagtccctcttcaggttcattaaggcgagcggcagtgcctgctgta
agacctgtagtattgtctccctgctcagacatccaggaggaggaggattttgctgtggct
gagacgcagtcctttacaattcagagccgtgaccgtgagagcagtgaggaaccaacccaa
gcttttgtacttgagtcttcttgtgataataaaaatgaccaatctaccaaaggagagtct
ttccagctgggactgtctgacagcagccacctgcagtgtccagaccaagctttagctatg
gagaacacccaatcttttgtttctgtggaaaggggtgtgaacctggaagatacccaagca
tatgcagccatgtcagctgcagacagatcctctgcagaaaatgacgcgaacctggaggcc
acacaggactatgtagaagatgaagagcctgagcgatatcaagtagatgtggccttagaa
gcaacgcaggcatatgttgcagagccgtacagtcacgctgaggatgatacagatgatgat
acttgtgagactcagccttcagactttactgcttcttctactcttgccatagcagaaacc
caaccaatgttgcctattgcaggagaggaggatctggcagctgaaaatccagtttgctct
gttcaacaaattcagccgagatccctcaaggaggatggtgcaaaggcagctcagcctcag
gagaagggcttcagcgacgctcagtctgtaactgaaactcagcccatgtgtacaagtgac
aatgaagcaagtgatgatgaaggctcatttccagctcagcgaaacagaacagcaaagcca
ctgccacctgaagaagcgcagacacaagatctcacttgttcagagttgtcgctttctgaa
acccagcccatggctacatgtgacgatgatgatgaagactcaatgccaggcccgagaaaa
aggaaagcaaagcagcttcatctcgaagaagaggagacgcaacctgtcacagactctgag
ctttccactgctgaaacccagcccatcgctgcatgtgacgatgatgatgaagactcaatg
ccaggcccacgaaaaaggaaagcaaagcagctgcagcctgaagaagagacgcaacccctt
gctagttctgaaggctctgctctggaaactcagcccttgagtacaaatgaaggccagcaa
agtgatgaagaggatgtgattgcatgtcctcggaaaagaaaagcaaagccacttcagctt
gaagaggagcagacgcagcccctcgctagtgctgatgttgaaaccccggcagtagtgaca
ggtaaatatgatgttaaggactcaattccaggtccacggaaaagaaaagcaaagcagatg
aagcttgaagaggagacacagccagtcgataattctataattacgcctgttgaaactcga
cccttgacaacaaaaaccagattatcgtcttcagaagaatctgaagctggaaccaatgga
gcttgtgttcgaaatttaagagtgacaagagcaaaaccgagagaagaggaagatcaggcg
gagtgtcctggaccatccaggaggcagactagaggaagaagtggaaaatctttgtctgat
ggtgacaacaataaggaaatggtaaaacaggctagagggaaaaagataacgaagcagcag
aaacatgatggtgaggaagaggatgaagtacctgtaagagaaagaaacaagcgggctgtg
aataagagcctgataaatcaacaagaagatgggaaatctagagaggaggaagatggtgca
gatctcggacaagaaagagaagaaaatgataaagaaaggacgactgatgaaagagagaag
gacgagatagaaaggcaactcaaggaagagaagttagaaacagaaagaagagtaaatgaa
gaacaagaaagattgcaggctgaaaatgcagcgagagcagagagagaaatcaaggagaag
gaagaacaagagaaaatagagtctgaaaggattgaaagagaagagagggagaggttggag
agagaagaaaaagagagattagaaagggaacgaaaggaacaagaaaaagaaatggcaaag
agggaagaagaagagaggcttgagagggaacaagaactgcaagcaagactcgagagagaa
gaaaaggaaatggaggagagagagaaagtgaagaaagaaaaagaagcccaagaaaaacag
ttgaaagaactggaagaaaagaaagaggaacaagacaaatccaaaacgccttcaagaggc
cgaagaacgaccagaagaactattgcttcacagagcacagcagagccagaccaagactca
actgtatcaaccaatgacgatttcccagcaaggagaaccagatcacgctcaaactcctcc
aactcggtcagctcagagaggtctgcttcaagtgtccacgcccaggaaagcaagggcaga
gggagagggcgagggacgaggaagaccagtgagacaccccagacacccgtcgccagaagc
agcaatcgaaggaccactgtggctgcaggagccgtagagcacgagcctgacttatctaac
tcactaacccctgaggtttcaagctgcagcgtgagctctcataacagaggaagaggaggc
aggcagcgaggaagagcgaggaaaacagaacatgacccagactctctcccttctgttggt
cagagtcaaagtgatcagcattcaagccctgccaggggcagaaagggcaagaaagcagag
tcctcctccaatgaggctctccataaaaatggtaaagaggactctcagccggctacgacc
actagagggcgacaacaagccagtgcagctacagatgaggaagaccagtcgaagcaagag
gaagcatgcaccagcgaggaatcactacctaaaaggaatgtcaggggcagaggtcagaga
gcagtaaagagtgaaactgtggcgaaaccagttgctcctgcggtcagtgatgatgatgat
gaggctaaagataaaagaaaagcaacgagagacttggaggcaaatactggagcagatctc
agctgcagcaaaggaaaggaaagatcttcaaaaatggcagaaaaagacaaggaagaagta
aaaggcgaaacaaacgatgagattcctgttagtttacaagggaagaaaagaggtagagca
tctaccgctcaggcaaagaagagaacaaaagagtctctctcagaggtggaggaggagaga
gaaaagatggagggtgagactgtggagaaaaaagtcagaggtcgacaatcagcggtctcg
agaaagaagaaagcggagctggaagaaagtggcacatctttaaccgctacaaatcaagat
gcaaatttggaggcatcagagccccagactccaaccagcaacgcatcccggaagcggcaa
gctcctgaaaatttctctcctgtggcaaagagtccccgctcctcctctgcatccccagca
gcaagtggtcaactacgaattgcaggccaggcatacaaggttctgttcacgggggtgatg
gatgaagcaggggagaaagtgttggcgcgcttaggcggcagcatggctaaaggtgtggga
gacatgaactgccttgtgactgacaaagtgcgcaggactgtcaaattcctttgtgctctg
gccaaaggcattccaatcgtcactacagactggctggaaaagagtggcaaagctgggagc
ttcctgcctccctcctcttttattgttgaggatcctgagcaggagaagaagtttaatttc
tccttgcacaagtctctaaggattgccagcagccagcctctcttaaagggatacgaggtc
catgttactagatcggttaagccagagccagttcacatgaaggacatcatttcctccagt
ggagctacctttctaccaaagatgccctcttctaataagcctaacactgtagtgatatcc
tgcgaggaggactggcctctgtgtcgcctggctctgtctgcatctctccctgtcgtcacc
gctgagttcatcctcacagggatcctgcagcagaaactcgattttcagtcccacacactt
tcgccttccacagcaaatctacaacctgcaggtggcagaggaaggggcaggaggaagact
tag

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