Oreochromis aureus (blue tilapia): 116324250
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Entry
116324250 CDS
T07295
Symbol
col15a1b
Name
(RefSeq) collagen, type XV, alpha 1b
KO
K08135
collagen type XV alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oau00535
]
116324250 (col15a1b)
Proteoglycans [BR:
oau00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116324250 (col15a1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
116324250
NCBI-ProteinID:
XP_039457622
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Position
LG18:complement(5103335..5159666)
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AA seq
1253 aa
AA seq
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MFQRWCLTMLLCWLAAALQVTEEQRSGSYLNLTDLIGFPLPPSVSFTAGFEGHPAYKFGS
QANVGRLTKTFVPGSFYRDFAIIVTVRPASQRGGMLFAITDAQRKVVKLGLALTPVREGL
QSILLYYTDQEQASHSHKAAAFSVPDMTDQWTRFTVVVEHNEVRLYLDCGEAESKDFHRR
PEKLTFSHNSGIFVANAGSTGLDKFVGSIQQLVIKDDPRVAEEQCEDDDPYASGYASGDE
ALDDRETEKEPRKTAQEEGVPVSAPPTDAPEKFEDFSPHTGPTEARMDLMTGLHRTEEAG
EQPQGGDVRLKGERGDPGPPGPPGPPGPPSVFRETNLGTSGPQGPPGSPGLPGRDGHKGS
KGDKGDPGQKGSQGFPGLNGVVGAKGEKGDPGVGLPGPPGLPGPPGPPRSRSVPYGPDAL
GSGFEDLDSDAELIRGPPGPPGPPGPPGPPGPHLSSSATTEGLSPGHAGPPGAPGSDGLP
GKQGVPGPAGKDGPPGSPGAVGDKGEQGLPGPPGPKGECGSTGVQGIPGPQGPIGPEGKR
GLPGPPGPPGPPGPPGTKFFAEDMEGSGMTDQITGAGVRGPQGPPGPPGPQGKDGAPGAP
GVSVKGEPGDPGPEGLRGPAGLPGPRGAKGEKGSPGPKGERGADGLSIQGPPGPPGAPGP
VINLHDLLYNVTEGILNVTEIRGPPGPTGPEGLPGRAGFPGPRGPKGDIGPTGIQGPPGL
KGEKGEPGVTIAADGSLLSAPRGPQGPKGTKGDHGFPGPAGLTGPIGPPGQKGEYGFPGR
PGRPGIPGRKGDRGDSVGLPGPPGPPGPPGLPGRIIGLNGTVFPVRPRPHCKMGRESMTR
GHSAGPKGDKGDEGLPGEPGTPGLTFPDENVGTKGDQGYKGQKGEKGDVGLPGPPGIPGR
SGLVGPKGESIVGPMGPTGSPGQPGPPGFGRPGPRGPPGPPGPPGPPPPYGSTVSIPGPP
GPPGPPGSPGYANSVTSYKTIHALTQEAHHAAEGTLAYVSERGGELYIRTRNGWHKIQLG
ELIHYEPSSDTSQSLSRPGEWSRAHRIHSQELQEGSRGYQHSYNLLPQHFNAVSGLHLVA
LNAPLKGDMRGIRGADFQCYQQARAVGLTSTYRAFLSSHLQDLATIVRKADRNDMPVVNL
RGQVLFNSWMSIFSGNGGMFDPSTPIYSFDGRNIMSDSAWPEKLVWHGSSTTGIRLTTNY
CEAWRTADMAVTGQAALLQTGRLLGQHVRSCSNHYVVLCIENTYVGNMHQRRN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagcgatggtgtcttaccatgctgctgtgctggctggcagcagccctgcaggtt
acagaagagcaacgctcaggaagttatctgaacctaacggacttaattggcttccccctc
cctccctctgtgtccttcactgctggctttgagggtcatccagcctacaaatttgggtct
caagccaatgtcggccgactcaccaaaacctttgtgccgggatcgttctaccgggacttt
gctatcatcgtcacggtgcgcccagctagccagagaggtggcatgctctttgccatcaca
gatgcccaacgcaaggtggtgaagctgggtttggccctcactccagttcgcgagggcctc
cagagcatcttactgtactacactgaccaggagcaggcctcccacagccacaaagcggct
gcctttagcgtcccggatatgactgaccagtggacacgattcacggtggtggtggagcat
aatgaggtccgtctctacttggactgtggagaggccgagagtaaggacttccatcgtagg
ccagagaaactcaccttttcacacaattcaggcatttttgtagctaatgcaggaagcacg
gggcttgacaagtttgtgggttcgattcagcagctggtcataaaagacgatccaagagtg
gctgaggagcagtgtgaagacgatgatccttatgcctcggggtacgccagtggagacgag
gctttggatgacagagagacagagaaagagccgaggaagaccgcacaggaggagggtgtt
cccgttagtgctccgcccactgatgctccagagaagtttgaggacttttctcctcacacg
ggtccaacagaagctcgaatggacctgatgacagggctacaccgaacagaggaggcggga
gagcagccacaaggtggtgatgtcaggttaaaaggagagcgcggtgatcctggcccacct
ggcccacctggtccaccaggtcctcccagtgtattcagagagactaaccttggaacatct
ggcccacagggaccaccaggatctcctgggctgccagggagagatggacacaagggaagc
aaaggtgataaaggagatccaggccaaaaagggtctcaaggatttccaggcttgaacgga
gtagttggagctaaaggagagaagggagacccgggagttggtttaccaggcccccctggc
cttcctggaccccctggaccccccagatcacgcagtgtaccttatggaccagatgccctg
ggttctgggtttgaagacctggacagtgatgctgaactcatccggggtcctcccggtcca
ccgggccctccaggacctcctggtccccctggaccccacctgtcctcatctgccaccact
gaaggactttctcctgggcatgctggaccacctggtgcacctggcagtgatggccttcca
ggcaaacaaggagtaccaggtccagcaggaaaagatggtcctccaggttcacctggggct
gtaggtgacaagggtgagcaaggcctacctgggcctcctgggccaaagggtgaatgtggg
tcaacgggtgtccaaggaattccagggcctcaagggcctattggtccagaaggaaagaga
ggccttccaggtccaccaggaccccctggcccaccagggcctccaggaaccaaattcttt
gcagaggatatggagggatctggcatgactgatcaaattactggagctggagtcagaggc
ccacagggtccacctggcccaccaggaccacagggtaaggatggagcaccaggagctcca
ggggtctctgtcaagggtgaaccaggagacccaggaccagagggtcttcggggtcctgct
ggactaccaggtcctaggggggccaaaggagagaaaggcagtccaggacccaagggtgaa
agaggagctgatggcctcagtatccaaggaccacctgggcctcctggggctcctggacct
gtcattaatctacatgatctgctctataatgttacagagggtatcctcaacgtcacagag
atcagaggaccacccgggcctacgggtcctgaaggcttgcctggcagagctggatttccc
ggccccaggggaccaaagggagacataggacctacaggtatccagggccccccagggctt
aagggagagaaaggagaaccaggggtgacaattgctgctgatggatctctcctgtctgca
ccaagaggccctcaagggcccaaaggcacaaagggtgaccatggcttcccaggacctgct
ggacttacgggtccaataggacctcctggacaaaaaggagaatatggtttccccgggcga
ccagggcgacctggtatcccggggagaaaaggtgacagaggagattctgttggcctaccg
ggacctccaggtcctcccggcccacctggacttccaggaagaattattggtctgaatgga
acagtgttcccggtgcgccccagaccgcattgcaaaatgggacgagagtcaatgacaagg
ggacattcagctggacctaaaggagacaaaggagatgagggattacctggggagccagga
acacctgggctcacatttccagatgaaaatgtggggactaaaggtgatcagggatacaaa
ggtcagaagggagaaaaaggggatgtgggcctgcctggtcctccagggatcccagggagg
tcaggacttgtgggtccgaaaggcgaatccattgttggtccaatgggtcctactggttct
cctggtcagcctggacctccaggatttggacggcctggacctcgaggtccgcctggccct
cctgggcccccaggaccaccccctccatacggatcaactgtcagtatccccggccctccc
ggtcctcctggtccaccaggctctccaggatatgcaaactctgttaccagctataagaca
atccacgccctcacccaagaggcacaccatgctgctgaaggtaccttggcatatgtgtct
gaaaggggaggcgagctgtacatcagaacacgcaatggttggcacaagatccagctcgga
gagttgatccattatgaaccttcatcagacacatctcagtccctcagcagacccggagaa
tggagtagagcccataggatacacagccaggagctgcaggagggaagcagaggataccag
cacagttataacctgctaccacagcatttcaatgcagtctctgggcttcatctcgtagca
ctgaatgccccgctcaaaggagatatgcgtggcatccgcggagcagacttccagtgttac
caacaggcacgcgccgtggggctcacctccacatacagagccttcctgtcatcacacctt
caggacctggcaaccattgtcagaaaggctgaccgcaatgacatgcctgtggttaatctg
aggggtcaagtgttgttcaatagttggatgtccatcttctctgggaatggaggcatgttt
gatccgtccacacccatctactcctttgatggacgcaatataatgagtgactcggcttgg
ccagagaagctggtttggcatggctccagcaccacgggcatccgcttgaccactaactac
tgcgaggcctggaggacagcggacatggcggtgacgggacaggctgccctgctgcagacg
ggacgactgttagggcagcacgtgcgctcctgctccaaccactatgtagtgctgtgtata
gagaacacatatgtgggcaacatgcatcaaagaaggaactga
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integrated database retrieval system
