Oreochromis aureus (blue tilapia): 116324361
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Entry
116324361 CDS
T07295
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03013
Nucleocytoplasmic transport
oau03015
mRNA surveillance pathway
oau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116324361 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
116324361 (ddx39b)
03015 mRNA surveillance pathway
116324361 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116324361 (ddx39b)
03041 Spliceosome [BR:
oau03041
]
116324361 (ddx39b)
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116324361 (ddx39b)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116324361 (ddx39b)
Spliceosome [BR:
oau03041
]
Complex C
Other components
EJC/TREX
116324361 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116324361 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
116324361
NCBI-ProteinID:
XP_031600799
Ensembl:
ENSOABG00000007794
UniProt:
A0A668SLZ0
LinkDB
All DBs
Position
LG22
Genome browser
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEDDEVEAGGAGDVGGASDVSIRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLPIKKDEEVLKKDSPHIVVGTPGRI
LALTRNKTLNLRHMKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLNGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIGELPE
EIDISSYIESAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaacgacgtagataacgagttgttggactacgaggatgatgaggtggaggcc
ggaggggctggagatgttggaggtgcaagtgacgtgtcgataagaaaggagggggtgaag
ggctcttatgtgtccattcactcctctggattcagagactttctattgaaacctgaactg
ttgagagccatagtggattgtgggtttgaacatccgtctgaggttcagcatgaatgcatc
cctcaggcaatcctgggtatggatgtgctctgtcaggccaagtctgggatggggaagact
gcagtgtttgttcttgccaccctgcagcagctagagcccatcaccggacaggtctctgta
ctggtgatgtgccataccagagagctggcgtttcagatcagcaaggaatatgagagattt
tcaaagtacatgccgactgtcaaggtggcagtgttctttggagggctgcctataaagaag
gacgaagaggtgctgaagaaagactctcctcatattgtggtgggaacaccaggcagaatc
ctggcactgacgcgcaacaagacgctcaatttgcgtcacatgaaacatttcatcctggat
gagtgtgacaagatgctcgagcagcttgacatgcgccgagatgtccaagagattttccgt
atgactccccacgagaagcaggtcatgatgttcagcgccaccctgagtaaagagatccgt
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtagatgatgaaaccaag
ctaactctgaatgggctgcagcagtactacgtcaagctgaaggataatgagaaaaacaga
aagctctttgacctcctggacgcactagagttcaatcaggtggtgatctttgtgaagtcc
gtccaacggtgtgtagctctggctcagctgcttgtggagcagaactttccagcgattgcc
atccatcgagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaggacttc
cagaggcgaatcctggtggccaccaacctgtttggacgagggatggacattgagagagtc
aacattgccttcaattatgacatgccagaagactctgacacttaccttcacagggttgct
cgagcaggcaggtttggaacgaaaggcctggccatcacatttgtgtctgatgaaggtgac
gcccgcacgctcaacgatgtccaggaccgcttcgaggtgaacatcggcgagctgccagaa
gagatagacatctcctcgtacattgaatcagcacgataa
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