Oreochromis aureus (blue tilapia): 116324436
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Entry
116324436 CDS
T07295
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
Organism
oau
Oreochromis aureus (blue tilapia)
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116324436
NCBI-ProteinID:
XP_031600887
Ensembl:
ENSOABG00000017832
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Position
LG9:complement(26243231..26306740)
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AA seq
1240 aa
AA seq
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MAPRIPPWLFGLFLLALRFCCHCSSAYQLLDDRGPRGALDLTELIGIPLPPSVSFVTGFE
GYPAYSFGPEANVGRLTKSFIPDPFYHDFAITVTAKPTTRQGGVLFAITDAYQKIVQLGV
ALSEVEDGSQRVILYYTDAETRGRTQEAASFKMGDLTGRWARFTLTVQGSEVRLYMDCEE
YHRVAFIRSAQPLTFESSSGIFVGNAGGTGLQRFVGSIQQLLLKADPTAPDDQCEEDDPY
ASGYGSGDDEDLKGNDEVKKIVEEREFTMPELAPTYIVIPPPPTEMPTSDDEDDDFEEAS
GQEMEATTVQAKSFQTGAAVSTPDTSLQVYPGQKGEPGPAGPPGAPGPPGPASAEGQGGE
PGPRGPQGPQGPPGTPGLPGKDGQPGSKGETGSPGANGFPGLPGESGPKGEKGDPGVGLP
GPPGPPGPPGQPSKSSVFLEGSGFEDFDSDTEIIRGPPGPPGPPGLPGPPGSPSEDIFSG
LPGTPGKDGRDGAKGEPGLPGVSGIDGIPGPAGEKGDKGEPGVSGQPGPKGDQGPPGFPG
LPGADGPEGHPGPRGLPGPPGPPGPPGRNFIPDFEDLEGSGLETAAGATLPRGPQGPPGL
PGLPGPKGKDGFEGVPGKPGQKGEQGVPGHPGIPGTDGLTGTEGPKGDKGDQGQKGEPGQ
DGRSLPGPPGPPGPPGTIINLQDLLLNDTDGSFNFSGIFEAQGPAGPKGPKGDIGLPGFQ
GPPGLKGEKGEPGFVISADGSMMSGLSGPVGPKGVKGDNGVPGPPGIQGPIGPPGHKGEF
GLPGRPGRPGLMGHKGEKGDSRGLPGPPGPPGPPGRPGMFNCPKGTVFPIPPRPHCKMPL
NSNGTIATGNCQTGIKGEKGERGLPGIPAPPMSYNQRGGWVMNGDQGIKGEKGEAGFPGI
SGISGRPGPVGPKGESVVGPPGPPGPPGPPGIPGYGKPGLVGPPGPPGPPGPSGSSLRYG
SGLTIAGPPGPPGPPGPPGPASPSSNTASLKTFSTRESMMQQTVKDAEGTLAFVTTTGSL
FLKVSQGWKEIQLGSLIYLSNNIIPQDEPRASHHVRGDTMQRIHSVKGRLNLVALNQPHS
GDMMGLDMADRMCFEQAKAMGLAPNYRAFISSHRQDLVHVVYPGFRQTLPVTNLRGDMMF
RNWRSIFTGNGGPINTRIPIYSFDGRDVLADPFWPQKSVWHGSTSQGLRATDKHCETWRA
DHVSVMGQSSSLTSGLLLGQETRSCSNEYIVLCIETHKNP
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggctccacgcattcctccctggctctttggattatttctccttgccctccggttctgc
tgccattgctcgtctgcctatcagctgctggacgaccgtggtcctcggggagccttggac
ctgacagagttaattggcattcccctccctccctccgtctccttcgtcacaggcttcgag
ggttaccccgcttacagcttcggcccggaggccaacgtggggcggcttacaaagtcattc
atccccgacccgttctatcatgacttcgccatcacagtcacagccaaaccaaccacccgg
caaggcggcgtgctgttcgccatcacagatgcatatcagaaaattgtacagttaggtgtg
gctttgtctgaagtggaggatggctcccagagagtcatactgtactacaccgacgcagaa
acaagaggccgcacccaggaagctgcttcattcaaaatgggtgacctgacaggaagatgg
gcgaggtttacactcactgtgcagggttcagaggtgcgcctctacatggactgtgaggaa
taccatcgggttgccttcatcaggagcgctcagcctctgaccttcgagtccagctcaggg
atctttgtagggaatgccgggggtacgggcctgcagaggtttgtgggctccatccagcag
ctgctgttgaaggcagatcccacggccccggatgaccagtgtgaggaggacgatccttat
gcctctggctacgggagcggtgacgatgaagacttgaagggtaacgatgaagtgaagaag
attgtggaggagagagagttcaccatgccagagctggcccccacttacattgtgatccca
cctccgcccactgagatgccaacaagcgatgacgaagatgacgactttgaggaagcttct
gggcaggaaatggaggcgaccacggtgcaagcaaaatcattccagacaggtgctgcagtt
tccacacctgacacttccctccaggtttatccagggcagaaaggggagccaggcccagct
ggtcccccgggagctccgggccctccaggaccagcctcagcagagggacaaggaggggag
cctggaccacggggcccacaaggaccacagggacccccaggcacacctggacttccaggg
aaagatggacagcctggaagcaaaggggaaactggttcaccaggagcaaatggatttcca
ggactacccggagagtctggtcctaagggagaaaagggtgatcctggtgttggactgccc
ggccctccgggtcctccaggacctccagggcagcctagcaagtcctctgtgttcctggag
ggttctggatttgaagactttgacagtgacacagagattattaggggtcccccagggcct
ccaggtcccccaggactgccagggcccccaggatctccttctgaggacatcttttctgga
ctacctgggactcctgggaaagatggaagggatggagcaaagggtgaacctggacttcct
ggagtcagtggaatagatggcattcctgggcctgctggggagaaaggagacaagggcgag
cctggtgtgagcggtcaaccaggaccaaagggagatcagggcccaccaggattcccaggt
ctaccaggagcagatggtccagaaggacatcctggtcctaggggtctgcctggtcctcct
ggccccccagggcctccaggaagaaacttcatcccagactttgaggatctggaaggatcg
gggctagagaccgctgcaggagctacattacccagaggtccacagggacctccaggactc
ccaggacttccaggacccaagggtaaagatggttttgaaggtgttccaggaaagccagga
caaaagggagagcagggtgttcccggacacccaggcattcctggtacagatggactgact
gggacagagggaccaaagggggacaaaggtgaccaaggacaaaagggagagccaggacag
gatgggcgtagtttgcctggccccccaggaccacctggaccaccaggaaccatcatcaac
ctccaggatctcttattgaatgacacagatggttcctttaacttctcagggatttttgaa
gctcagggacccgctggaccaaagggtccaaagggtgacattgggttgccaggtttccaa
ggacctcctggacttaaaggtgaaaagggtgagccaggatttgtcatctcagcagatgga
tccatgatgtctggcctgtctgggccagtgggacctaaaggagtcaagggagataacggt
gtaccagggccccctggaattcaagggcccataggaccaccggggcacaagggagaattt
gggctccctggaagaccaggtcgcccaggcctgatgggacataaaggagagaaaggggac
tctcgaggcctgccaggacctcccggccctcccggaccaccggggcgcccaggaatgttc
aactgccccaaaggaacagtgttccctataccccccagaccacactgcaaaatgcccctt
aattcaaatggaaccattgcaactggtaactgtcagacaggaataaaaggggagaaggga
gagaggggacttccagggataccagctccaccaatgtcatataatcaaagaggaggctgg
gtgatgaatggtgaccagggaatcaaaggggaaaagggagaggcggggttcccagggatt
tcaggtatctctggaagaccaggaccagtggggcccaaaggagaatcagtggtcggtccc
cctggtccccctgggccaccaggccctcctggtataccaggctatggcaagcctggtctt
gttggacctcctgggccaccaggacctccagggccctctgggtcatccttgagatatggt
tcaggtctgaccattgctggccccccaggccctcctggacctcctggaccacctggacct
gctagtccttcaagtaacacagcatctctgaaaacattttcgactcgtgagagtatgatg
cagcaaacagtgaaagatgcagagggcactctggcatttgttacaacgacaggaagtctc
ttccttaaagtttcccagggatggaaagagatccagcttggcagcctgatctacctctcc
aataacattatcccacaagatgagcctcgagcctcacatcatgtaagaggagacaccatg
caaagaatacactctgttaaaggcaggctcaacctggtggcattgaaccagcctcactca
ggggacatgatggggcttgacatggctgaccggatgtgcttcgagcaggccaaggcgatg
ggtttggctcccaattaccgtgccttcatttcctcccacaggcaagacctggttcatgtt
gtctatccaggtttccggcagactctgccagttaccaacctcagaggagacatgatgttt
aggaattggcgctcaattttcaccggcaatggggggccgatcaataccaggatacccatc
tactcctttgatggccgggatgtcttagctgaccccttctggcctcagaagagtgtttgg
cacggctctaccagccaggggctccgcgcaacagacaagcactgtgagacatggcgagca
gaccatgtatccgtcatgggccagtcatcaagcctgacctcaggtctgctcctgggtcag
gagactcgtagctgttccaacgaatacattgtcttgtgcattgagacccacaaaaacccg
taa
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