Oreochromis aureus (blue tilapia): 116326037
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Entry
116326037 CDS
T07295
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116326037 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oau04121
]
116326037 (trim54)
Ubiquitin system [BR:
oau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116326037 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-B_box
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-RING_6
zf-RING_2
Sina_RING
Prok-RING_4
DUF5799
Zn_ribbon_FGT1_2
Aldedh
EFR3_ARM
DUF1664
CYP38_PsbQ-like
Motif
Other DBs
NCBI-GeneID:
116326037
NCBI-ProteinID:
XP_039454994
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All DBs
Position
LG15:21099343..21117243
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AA seq
365 aa
AA seq
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MSFALGFKHTTAGSSGPGAGSGATMENLEKQLICPVCLEMFSKPVVILPCQHNLCRKCAN
DIFQSANPLWHSRGSSSATASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYRQQ
ESSRLVSMKPEQQQQQLMCEEHEDEKINIYCLSCQTPTCSMCKVFGQHRDCDVAPLGTVY
MRQKTELSDGIAILVASNDNVQAVISQMEAICRTIEENGQRQREHLSGHFERLVSILEER
KQELVGLITKEQDEKLKHVQSLIRQHSDHLEVGVTLVETGIQSMEEPHMPLFIQSAQAIL
EKMAVMARASKLELPELGYESMSHFVIDIDDLADTLRNINFCCSVAGDEEDFEEVEEELD
FGSRF
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgctctcggctttaagcacacgacagcaggcagctctgggcccggtgctgga
agcggagccaccatggagaatctggaaaagcagctgatctgtcccgtctgcctggagatg
ttctccaaacctgtggtcatcctgccctgtcagcacaacctctgccgcaagtgtgccaat
gacatcttccagtcagctaatcctctgtggcattcccgtggttcctccagtgcgacggcc
agtggcggtcgctttcgctgtccgtcgtgccgccatgaggtggtgctggaccggcatgga
gtctatggcctccagaggaacctgctggtggagaacattatcgacatctacagacagcag
gagtcctccagacttgttagcatgaaaccagagcagcagcagcagcagctcatgtgtgaa
gaacatgaagacgagaagatcaacatctactgtttgtcctgccagacgccgacctgctcc
atgtgcaaagtgttcggacagcacagagactgtgacgtggctccgctcggcaccgtctac
atgagacagaagacggagctgagtgacggcattgcgatcttggtggccagtaatgacaac
gtccaggcagtcatctctcagatggaagcaatctgccgcaccatagaggaaaacggccag
cggcagagagaacacctgagcggccactttgaacgtttggtgtccatcttggaggagcgg
aagcaggagctggtgggtctcatcaccaaagaacaggatgaaaagctcaaacatgttcag
tcgctcatccgtcagcacagcgatcacctggaggtgggcgtcacgctggtcgagacaggc
atacagtccatggaggagccgcacatgcctctgtttatacagagcgcccaagccatactg
gaaaaaatggcggtgatggcgagagcctcgaagttggagctcccagagctcggttatgag
agtatgagccacttcgtcatcgatatcgatgacctcgctgacacgctgagaaacatcaac
ttctgctgcagtgtggcaggtgatgaagaggattttgaagaagtggaggaagagttagac
tttggctccagattttaa
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