Oreochromis aureus (blue tilapia): 116326813
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Entry
116326813 CDS
T07295
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116326813 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oau03041
]
116326813 (sf3b1)
03036 Chromosome and associated proteins [BR:
oau03036
]
116326813 (sf3b1)
Spliceosome [BR:
oau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116326813 (sf3b1)
Complex B
116326813 (sf3b1)
Complex C
U2 SnRNP specific factors
116326813 (sf3b1)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116326813 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
116326813
NCBI-ProteinID:
XP_031604084
Ensembl:
ENSOABG00000001240
LinkDB
All DBs
Position
LG16:complement(32555918..32573328)
Genome browser
AA seq
1311 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLISTGVFDPEIYEGSDSRFAGYVTSI
AANEQEEDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAAAQAVPKRKRRWDQTADQTPSNATPKKMSSWDQADASAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSST
PLFTPGKTPIGTPAMELQTPTTAHMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPDDIQ
YFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYTL
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcctccctgctggaggatggagagcagggagtgggcctgatctccactggcgtt
tttgacccagagatctatgaaggcagcgacagtcgctttgcaggatacgttacttccatt
gctgccaatgagcaagaggaggatgatgaagatgatacgtcaacaagcttgttgggacaa
aagaagccagggtaccacgcgccggtggcaatacttaatgccattcctcagtcagatgaa
cagtacgacccatttgcagagcatcgtccacagaagattgcagagcgggaggatgaatac
aaggctcggcgcagacagatgatcatctctcctgagcgtctcgacccctttgcagatggg
ggcaaaacaccggatcccaagctgcaggttaggtcatatgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaatgggtctgctgctgcccaagctgtccctaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccctccaatgctacacccaaaaagatgtccagctgg
gaccaagctgatgccagtgctgaaactcctggacatacccctgcgcacacaccttcaaac
agccgatgggatgaaacccccggtcgccctaaaggcagtgaaaccccaggggccactcct
agttcccgaatgtgggacccgactcctagccacacacctgccggtgctgccacaccaggc
agagacacgcctggccatgccacacctggtcacgggggagccacaggaagcgttcgcaaa
aatcgctgggatgagaccccaaagactgagagggagaccccaggacatgggagcggctgg
gctgagaccccaagaacagatagaggagaagagtcagtgggcgaaactccgactccagga
gccagtaagaggaagtctcggtgggatgaaacccctgccagccagatgggctcctcaaca
ccactttttaccccaggaaaaactcccataggcacaccagctatggaattgcaaacccca
actacagcacacatgactccagagcagctgcaggcatggaggtgggagagagaaattgat
gagaggaaccgacctctaacagacgaggagctggatgccatgttcccagagggatacaag
gtgttgcctcctcctgcaggctacgtgcctatccgcaccccggcccgtaaactggcagcc
acgcccacacccattggaggcatgacgggcttccatatgcaggcagaggatcgcaccaca
aaacagatgaacgaccaaccctcaggaaatctccctttcctcaaaccagatgacatccag
tactttgacaaactgctggtggaggtggatgagtccactctgagccccgaagaacagaaa
gaaaggaagattatgaagctgctgctgaagattaaaaatggaactcctcccatgagaaag
gctgctctgcgtcagatcacagataaggctcgcgaattcggagcaggtcccctgttcaac
cagatcctgccactgctcatgtcccccaccctggaggatcaggagcgccatcttttggtt
aaagtcattgaccgcattctctacaaactggatgacctggtccgaccatatgttcacaag
atcctggtggttattgagccgctgctcatcgatgaagactattatgccagagtggaaggc
agagagatcatctctaacttggcaaaggctgctggtttagctactatgatctccacgatg
cgacctgatattgacaacatggacgagtacgtcagaaacaccacagcccgagcctttgct
gttgtagcctccgccctcgggatcccctctctcctccctttcctcaaagctgtgtgcaaa
agcaagaagtcctggcaggctcggcacacaggcatcaagattgtgcagcagatcgccatc
ctcatgggctgcgccattctgcctcaccttcgcagtttggttgagattattgaacatggg
cttgtggacgagcagcagaaggtgaggaccatcagtgccctggctatagctgccctggct
gaagctgccacaccatacggtatcgagtcctttgactcggtgctgaagccactgtggaaa
ggcatcaggcaacacagaggaaagggtctggctgctttcctcaaagctattggttacctc
atcccactgatggatgctgagtatgcaaactactacaccagagaggtgatgctgatcctc
atcagagagtttcagtcccctgatgaggagatgaaaaagattgtgctcaaggtggtgaag
cagtgctgtggcacagatggtgttgaggccaactacatcaagactgaaatcctgcccccc
ttcttcaagcatttctggcagcacaggatggctctggacagacgcaactacagacagctg
gtggacaccacagtggagttggctaacaaagtgggagcagcagagatcatctcacgtatc
gttgatgacctgaaagacgaggcagaacagtacaggaagatggtgatggagaccattgaa
aaaatcatgggcaacttgggcgcagctgacatcgaccacaagctggaggagcagctgatc
gacggtattctgtatgccttccaggagcagacgacagaggattctgtcatgctgaatggt
ttcggtacagtggtgaatgcccttgggaagcgtgtgaaaccctacctgccacagatctgc
ggtacggtactgtggcgtctcaacaacaagtcggccaaggtccgtcagcaagctgctgac
ctgatctcccgcacagccgtggtcatgaagacctgccaggaggagaagctgatgggtcat
ttgggggtggtgctgtacgagtatctgggagaggagtaccccgaggtgctgggcagcatc
cttggagcgctgaaggccattgtgaacgttattggcatgcacaagatgaccccaccaatc
aaagacctgcttcctcgtttgactcccatcctgaagaacagacatgagaaagtccaggag
aactgcatcgacctggtgggcaggatcgccgacaggggtgctgagtatgtgtctgccagg
gagtggatgaggatctgtttcgagttgctggagttgctcaaggcacacaaaaaggccatc
cgcagagccaccgtcaacacgtttggttatatcgccaaagccatcggtcctcatgatgtc
ttggccactctgctcaataaccttaaagtccaggagcgacagaacagggtctgcacgacc
gtggccatcgccattgttgctgagacctgttcgcccttcacggtgctgccggccctaatg
aacgaataccgcgtgcctgagctcaacgtgcaaaacggtgtactgaagtccctctccttc
ctgttcgagtacattggagagatgggcaaagactacatctatgccgtcacgccgctgctg
gaggatgcacttatggacagagacctggtccatagacagacagccagcgctgtggtccag
cacatgtccctcggtgtctacggttttggctgtgaggactccctcaaccacttgttgaac
tacgtgtggcccaacgtatttgagacgtcacctcacgtcatccaggctgtgatgggcgct
ttggaggggctgagggtcgctctcgggccctgccgcatgctgcagtactgcttacagggt
ctgttccatccagccaggaaagtgagggacgtctactggaagatctacaactccatctac
atcggctctcaggacgccctgattgctcactacccacaggtctacaacgacgacaaaaat
gtctacgtccgctacgagctcgaatacaccttgtaa
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