Oreochromis aureus (blue tilapia): 116327166
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Entry
116327166 CDS
T07295
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oau03000
]
116327166 (sox6)
Transcription factors [BR:
oau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116327166 (sox6)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
116327166
NCBI-ProteinID:
XP_039466233
Ensembl:
ENSOABG00000010982
LinkDB
All DBs
Position
LG1:20832058..20961128
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AA seq
798 aa
AA seq
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MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQEHLSWEKEESAEAHGTPQLPLHSL
LHGKAPDEMQPLSSVPSESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARE
RSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSKDWKEKMER
LNTSELLAEVKGTPESLAEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQM
ELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQ
GFLFPPGMSYKPGDNYPVQFIPSSVAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPPL
PQPLTASGPISPSSLKNDKSSSSPITQVKEEGTQPLNLSARPKTTELVKSPTSPTQNLFP
GSKSSPNSLMSKGGTPSPLGGLGRGSSLDILSSLNSTALFGDQDTVMKAIQEARKMREQI
QREQLQHHQQGMEAKLSALSSVGLNNCRADKERAHFDSIGHHLGKLGEEGKLGHRVIDLT
RPEDLDGSKEVNGSADKPQPYYCWPTGGAGPTEARVFRESRGRNNNEPHIKRPMNAFMVW
AKDERRKILQAFPDMHNSNISKILGSRWKAMSNQDKQPYYEEQARLSKLHLEKYPNYKYK
PRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQPPQLPITTSASMVYPGAITMAT
TTPSPQMTSECSSASASPEPSIPVIQSTYNMKLEPTGMVNNSEPVNGEDEMDMYEDFEDE
PKSDYSSENDTQEPVSAN
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttcttcgtagcagctttttactgagcagagtcatgtcttccaagcaagcc
acgtctccttttgcctctgtggttgatggggatgatgccatgagtcaggagcatttgtct
tgggagaaagaggagagcgcagaggcccatggcacaccacagctgccgctgcacagtctg
cttcatggaaaagcccccgatgaaatgcagccgctcagcagcgtaccatcagagagcgat
tgggacagcctggtgtcagcccagcagcgcatggaatctgacagcaataaagtatgctcc
ctgtactctttccggaacaattccacttccccacacaagcctgaggagggggcccgggag
cgaagtgacctgctgagcggatcagcgtttggaactccagagcgccgcaaaggaagcctg
gcagacgtagtggacactctgaagcagaagaagctagaggagatgacaaagacagagcaa
gacgaatcgtcgtgcatggagaaacttctttctaaagactggaaagagaagatggagagg
ctcaacacaagtgaactgctggcagaagtaaaaggtactcctgagagcctggccgaaaag
gaacaccagctctccacgatgatcactcagctgatcagcttgcgagagcagctcctggct
gctcacgatgaacagaagaagctggctgcctcacagatggagaaacagaggcagcaaatg
gagttagctcgtcagcagcaggagcagattgcaagacaacagcagcagcttctgcagcaa
cagcacaaaatcaacctcctccagcagcagatccaggtccagggtcacatgcctccgctc
atgatccccatttttccacacgaccaacgcactctagcagcagcagctgccgcccagcaa
ggctttctcttccctccaggaatgtcttataagccaggtgataactacccggtgcagttc
attccatcctcagtggcagctgcagcagcgtcaggactcagccccctccagcttcagcaa
ctgtatgctgcccagcttgccagcatgcaggtctctcccggagccaagatgcctccactc
ccccagccactcacggctagtgggcccatttctccgtcatctctgaagaatgacaagagt
tcctccagccccatcactcaagtcaaggaggagggaacacagcccctcaacctgtctgct
cggccaaagacgacagaactggtcaagtctcctacgtccccgacacaaaatctgttcccc
ggcagtaaaagcagccctaacagcctcatgagcaaggggggtacccccagcccacttgga
ggtctgggccggggatcttctctggatattctgtccagcctaaactctaccgcgttgttc
ggggaccaggacacagtgatgaaggccatccaggaggctcggaaaatgagggagcagatc
cagagggaacagctgcaacatcaccagcagggcatggaggcaaagctgtctgccctcagt
tcagtgggcctcaacaactgcagagctgacaaggaaagagcacactttgacagcatcggg
caccaccttggcaagctgggtgaggaaggaaagcttggccacagagttattgacctcacc
aggccagaagatctagatgggtccaaggaagtcaatggctctgcagataaaccccaaccc
tattattgttggccaacaggaggcgctggacctaccgaggcacgagtcttcagggaatct
cggggaagaaacaacaacgagccccacattaaaaggccaatgaatgcattcatggtgtgg
gccaaggatgagcggcgcaagatcctccaggctttccccgacatgcacaattccaacata
agcaagattctgggttcccggtggaaggccatgtctaaccaggacaaacagccctactat
gaagagcaggctcgtctaagtaagcttcatctagagaagtacccaaactacaagtacaaa
ccacggcctaagaggacctgcattattgacggaaaaaaactccgcatcggagagtacaaa
cagatgatgcgttcacggcgacaagagatgaggcagttctttactgtggggcagccaccg
cagctccccatcaccacaagcgccagcatggtctaccctggggccatcaccatggcgacc
accacaccctcacctcagatgacatcggagtgctcaagtgcctcagcgagtcctgagcca
tccattcccgtcattcagagcacctacaacatgaagctagagcccactggcatggtgaac
aacagcgagccggtcaatggcgaggatgaaatggacatgtacgaagattttgaggacgag
cccaaatcagactatagcagtgaaaatgacacacaagagccagtcagtgccaactga
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