Oreochromis aureus (blue tilapia): 116329234
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Entry
116329234 CDS
T07295
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116329234 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116329234 (ddx6)
03036 Chromosome and associated proteins [BR:
oau03036
]
116329234 (ddx6)
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116329234 (ddx6)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116329234 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
116329234 (ddx6)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116329234 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
116329234
NCBI-ProteinID:
XP_031607088
Ensembl:
ENSOABG00000015816
LinkDB
All DBs
Position
LG14:7195025..7206670
Genome browser
AA seq
481 aa
AA seq
DB search
MSTARTENPVILGLPNQNGQLRGSVKPAGAPGGGGGGPQQQLNQMKGTINNGNSQPAPTT
NAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRELALQVSQ
ICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQM
IVLDEADKLLSQDFVVMMEEILGFLPKQRQILLYSATFPLSVQKFMNSHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEVK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccaggacggagaacccagtgattctgggcttgcccaaccagaatggacag
cttagaggctcagtgaagcctgctggagcaccaggtggaggtggaggagggccgcagcag
cagcttaaccagatgaaaggcacaatcaataatggaaactcccagccagcccctacaaca
aatgctgtcatcaagcctggagatgactggaagaaaaatttgaaattgcccccaaaggac
atgaggatgaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattattgc
ctaaagagggagctgcttatgggaatctttgagatgggctgggaaaagccatctccaatc
caggaggagagcatccccattgcactgtcaggaagagatattttggccagagccaagaat
ggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaagaag
gactgcatacaagctttggtcatagtgcccaccagagaactggctctgcaagtaagccaa
atatgtatccaggtcagcaaacacatgggtggtgtgaaggtcatggcaaccacaggtgga
accaatctccgtgatgacatcatgaggcttgatgaaactgtacatgtggtcattgccaca
cctggaaggattttagacctcatcaagaaaggagtggccaaagttggtcaagtgcagatg
attgttctagatgaagctgacaagctcctgtctcaggactttgtggtcatgatggaggag
atcctgggctttttgcccaagcagaggcagattttgctttattctgcaaccttccctctc
agcgtgcagaagttcatgaattcacacttgcagaaaccctatgaaatcaacctaatggag
gagcttacactgaagggtgtgactcagtattatgcttatgtaactgaaaggcaaaaagtc
cattgcctcaacaccttgttttccaggctccagatcaaccagtccataatcttctgcaac
tcgtctcagagagtggaactccttgccaagaagatctcccagcttggttattcatgtttc
tacattcatgcaaagatgagacaggaacatcgtaaccgtgtattccacgacttcagaaat
ggcctgtgccggaatctagtctgcactgacctcttcacaagaggaattgacattcaagct
gtgaatgttgtgatcaattttgattttcctaagctgggagaaacgtaccttcatcgcatc
ggtagatctggccgctttggacacctgggtctagctatcaacctcatcacatacgacgat
cgcttcaacctgaaagggattgaggaacagcttggaacagaaataaagcccatccctggc
atcattgacaagagcctatacgtggcagagtaccacagtgagagtggcgaagaagtcaag
ccatga
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