KEGG   Oreochromis aureus (blue tilapia): 116329672
Entry
116329672         CDS       T07295                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
oau  Oreochromis aureus (blue tilapia)
Pathway
oau03013  Nucleocytoplasmic transport
oau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116329672 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    116329672 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oau03019]
    116329672 (thoc3)
   03041 Spliceosome [BR:oau03041]
    116329672 (thoc3)
Messenger RNA biogenesis [BR:oau03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     116329672 (thoc3)
Spliceosome [BR:oau03041]
 Complex C
  Other components
   EJC/TREX
    116329672 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    116329672 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd eIF2A Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 Tricorn_2nd WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_ACSF4 Beta-prop_WDR75_1st Beta-prop_SPT8 PD40 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_WDR41 Peptidase_S9_N Beta-prop_Nup120_160 Beta-prop_NWD2_C WD_LRWD1 Cytochrom_D1 Beta-prop_SCAP Beta-prop_WDR11_1st Beta-prop_ELP1_1st DPPIV_N PROPPIN Beta-prop_DCAF4 YNCE
Other DBs
NCBI-GeneID: 116329672
NCBI-ProteinID: XP_031607588
Ensembl: ENSOABG00000001847
LinkDB
Position
LG2:29363116..29367032
AA seq 322 aa
MASQYFQEMQESFKNNSKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtatttccaagagatgcaggagagctttaaaaataacagcaaaagccgc
gaatttcccgctcatacggctaaagttcactcggtggcgtggagctgtgatggcaggagg
ctggcctccgggtcctttgataaaacagcgagcgtcttcgtgctggaaaaggaccgtttg
gtgaaagagaataactacagaggtcacagtgacagcgttgatcagctctgctggcatccc
accaacccggatctgttcgtcacggcgtccggagacaaaaccatccgcatctgggatgta
cgcaccacaaaatgcatcgccaccgtcaacacgaagggtgagaacatcaacatctgctgg
agcccggacggtcaaaccatcgccgtggggaacaaagatgatgtggtgactttcatcgat
gccaagacacaccgctccaaggcagaggagcagttcaagtttgaggtgaatgagatctcg
tggaacaacgacaacgacatgttcttcctcaccaacggaaacggctgcatcaatattctg
agttatccggagctgaagcccatccagtccatcaatgcccacccgtccaactgcatctgc
atcaagtttgaccccacagggaagtatttcgccacaggaagtgccgatgcgttggtcagc
ctgtgggacgtggaggagctggtgtgtgtccgctgcttctccagactggactggccagtg
aggactctgagcttcagccacgatggcaagatgctggcctcggcctccgaggatcacttc
atagacatcgctgaggtggaaacgggagagaagctttgggaggttcagtgtgactctcca
accttcacagtcgcctggcacccaaagaggcccctgctggcctacgcctgcgatgacaag
gagggcaagtacgacaacaaccgggaggcgggcaccgtcaaactgtttggcctccccaac
gactcctga

DBGET integrated database retrieval system