Oreochromis aureus (blue tilapia): 116330023
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Entry
116330023 CDS
T07295
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116330023 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116330023 (smarca5)
03036 Chromosome and associated proteins [BR:
oau03036
]
116330023 (smarca5)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
116330023 (smarca5)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
116330023 (smarca5)
RSF complex
116330023 (smarca5)
WICH complex
116330023 (smarca5)
B-WICH complex
116330023 (smarca5)
NORC complex
116330023 (smarca5)
BRF complex
116330023 (smarca5)
NuRF complex (fruit fly)
116330023 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
116330023
NCBI-ProteinID:
XP_031608053
Ensembl:
ENSOABG00000023482
LinkDB
All DBs
Position
LG6:complement(17353448..17362038)
Genome browser
AA seq
1036 aa
AA seq
DB search
MSESANCVEQREEQAEVEDAGGAEEKSDSSDAGKESSSDAGADGQDASSSSSSSKTKDST
PGYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLS
AGDNRHRRTEQEEDEELLNESTKTTNVCTRFDESPSYVKTGKMRDYQVRGLNWLISLYEN
GINGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRA
VCLIGDRDERTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEK
SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGD
QKLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNS
AGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDIHLAVNSGKMVVLDKLLPKLKE
QGSRVLIFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFIFML
STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERI
VERAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAI
LERGERKTMEMKERMSSLGESSLRNFTMDTENTSVYTFEGEDYREKKKVITNWIEPPKRE
RKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIG
YKVPRNPDIPNSAQVQKEEQAKIDEAEALTEEELEEKESLLQQGFTIWNKRDFNQFIKAN
EKWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISI
KKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCI
RNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKTGSAQKRK
SEGTPDGRGRRKKLKL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgcaaactgcgtggaacagcgggaagagcaggctgaagttgaagacgcc
ggaggagcggaggagaagtctgactcttcagatgctggaaaagagtcctcttcagatgca
ggtgctgatggacaagatgcctcctcctcctcatcttcctccaaaactaaagactctact
ccaggttatgaggagaaagtgcaaacagaccggaccaacagatttgagtatctgctgaag
caaacagagctgtttgctcatttcatccaaccagctgcacagaagacccccacctcaccg
ctcaagatgaaaccaggacgtcctcgtatcaagaaggacgagaaacagaatttgctttca
gctggagacaatcgccaccgtcgcacggagcaagaagaggacgaggagcttcttaacgag
agcacaaagaccacaaatgtgtgcactcgctttgacgagtctccctcctatgtgaaaaca
ggaaagatgagggactatcaggtccgcggtctgaactggctcatttctttgtacgagaat
ggaatcaacggtatcctcgccgatgaaatgggattgggaaagactctccaaactattgca
ctgctggggtatatgaagcactacagaaacatccctggtcctcacatggtgctggttccc
aagtccaccctctacaactggatgaatgagttcaagagatgggtgccttcccttcgtgca
gtctgcctgatcggagacagagatgagcggactgccctgatccgagatgtgctgctgcct
ggagagtgggatgtgtgcgtgacatcctacgagatgctcatcattgaaaaggcagtgttc
aaaaaattcaactggagatacctggtcattgacgaggctcacaggatcaagaatgagaag
tcaaagttatcagaaatcgtgcgtgaatttaagaccaccaatcgtttgctgttgactgga
acacccctgcaaaacaacctccatgagctgtgggctctcctgaacttcctgctgcctgat
gtcttcaactcatcagaagactttgattcctggtttgacacaaataactgcctgggtgat
caaaagttggttgaacgtcttcacactgtgctgcgtcctttcttgcttcgtcgtatcaaa
gcagacgtggagaaaactctgctccccaagaaggagatcaagatttacgttggcctgagt
aagatgcagcgggagtggtacacaaagattctgatgaaggacatcgacattctgaactcg
gcgggtaaaatggacaagatgcgtctgctgaacgttctcatgcagctgagaaaatgctgc
aaccatccttacctgtttgatggggctgagcccggcccgccatacacaacagacatccac
ctggcggtgaacagcggcaagatggtggtgctagacaagctgctgcccaagctaaaagag
cagggttcacgtgtgctcatcttcagtcagatgaccaggatgctggacatcttggaggac
tactgcatgtggaggaactacggttactgtcgcctggatgggcaaacgccacacgaggag
agacagatctccatcaatgctttcaatgagcccaacagctcaaagttcatcttcatgttg
agcaccagggctggagggctgggtattaacctggctacagcggatgtagtcatcctctac
gactcagactggaaccctcaagtcgatcttcaggccatggaccgagctcacaggattgga
cagcagaagcaggtgcgagttttccgtttcatcactgaaaacacagtggaggagaggatt
gtggagagggccgagatgaaactgcgcctggactcgatcgtcatccagcaggggagactt
gtggatccgagtgcaaacaaactgggtaaggatgagatgctctccatcatccgccacggt
gccacacacgtgtttgcttccaaagagagcgagatcacagatgatgacatcgatgccatc
ctggagagaggtgaaaggaagactatggagatgaaggagagaatgtcatcgctgggcgag
agctctttgagaaacttcaccatggacacggaaaacaccagcgtgtacaccttcgaagga
gaggactacagagagaagaagaaggtcattacaaactggatcgagccacccaagagagaa
aggaaagccaattatgcggtggatgcctacttcagagaagctctgcgagtcagtgagccc
aaagcaccaaaggctcctcgtcctcctaagcagccaaatgtgcaggacttccagttcttc
cctccacgtctttttgagcttctagaaaaggaaattctcttctacagaaagaccattgga
tataaggttcctcgcaatccagacataccaaactctgctcaggtccagaaggaggagcag
gctaagattgatgaggccgaggccctcacagaggaggaactggaggagaaggaatccctc
ctgcaacagggatttactatttggaacaaacgcgacttcaaccaattcatcaaagcaaac
gagaagtgggggagagatgatattgagaacattgccagagaggttgaggggaaaactccg
gaggaagtcatggaatattctgctgtattctgggagcgctgcaatgagttgcaggatatt
gaaaagatcatggcccagatagaaagaggagaggccaggattcagaggaggatcagcatc
aagaaagcactggactcaaagattggccgctacaaggctcctttccatcagctccgtatc
tcctacggcactaacaaaggcaagaactacacagaggaggaagaccgcttcctcatctgt
atgcttcacaagctcggctttgataaggagagcgtgtacgatgagctccgccagtgcatc
cgcaactcaccacagttccgcttcgactggttcctcaaatctaggactgcaatggagctc
cagaggcgatgcaacaccctgatcaccctgatagagagagagaacatggagctggaggag
agggagaaggcggaaaagaagaaacggggcccaaagaccggctcggcgcagaaacgaaag
tcagagggaactccagacggtcgaggacgaaggaaaaagctcaagttgtga
DBGET
integrated database retrieval system
