Oreochromis aureus (blue tilapia): 116331403
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Entry
116331403 CDS
T07295
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116331403 (scaf4a)
03041 Spliceosome [BR:
oau03041
]
116331403 (scaf4a)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116331403 (scaf4a)
Spliceosome [BR:
oau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
116331403 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Transformer
Motif
Other DBs
NCBI-GeneID:
116331403
NCBI-ProteinID:
XP_039474694
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All DBs
Position
LG10:complement(16470265..16478290)
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AA seq
653 aa
AA seq
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MDAVNAFNHELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGPDKDVFGPRFTKNITGTFENLCLCPVEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSGSGAAPNTGADEPGSPPPPAKEPVTVVTANSTMIPAAQLHNS
DAFAAVAQLFQSSQGQQLQQMLQNFQQQPVKPETNAQPPPQIIHPQAPNVSAGLGMVAPQ
PPLPSQPAQLTQPAQQKTAFDKKLLDRFDYDDEPEVGEETKKDEISSPPCKPLNFFICWH
VCDTRKRKALIKIMQQPPAFPQHMDHFKPQINIQQDISQQVHLPPNGQLQVHGLPPGQSF
PAAMPPMGHVLPGMSLSGSSGPPGFPGVYHHQNAAQQQQDLPMDVDHSSMRDGRHGRRSH
SGSRSPKRRRSRSNSRTRRSRHRRSRSRSRDRRHHSPRSRSQERREREKERERRQKGLPP
IKSETVSICSTTLWVGQLDKRTQQQDVACLLEEFGQIESINMIPPRGCAYIVMIHRQDAF
RALQKLSRGTFKVNQKAIKIAWALNKGIKADYKQYWDVELGVTYVPWSKVREDQLEELKE
GGMLDVDTLSPEWSGTRKALDHPEELTHNGRSEQQQPEETQAAPVPAPTAPPT
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtcaacgcctttaaccacgagttattctcattgatggactccaaaccacca
atatctcgggcaaagatgatctccatcaccaaatctgccatcaaagcaatgaaactttac
aaacatgtggtccagattgtggaaaagtttataaaaaagtgtaagcctgagtataaggta
gcaggcttatatgtggtggattccattgttaggcagtccagacaccagtttggacctgac
aaggatgtgtttggaccaaggttcaccaaaaacattacaggaacttttgagaacctctgc
ctttgccctgtggaagacaggagtaagattgtgcgggtgttgaacctgtggcagaaaaat
ggggtgttcaagatagaagttattcagcccctcttggacatggcagcgggctctggcagt
ggtgctgcacccaacacaggcgcagatgagccaggttctcctccacctccagccaaagag
ccagttacagtggtaacggcaaactccaccatgatacctgctgctcagctgcacaactct
gatgcctttgctgccgtggcacagctcttccagtcctcacagggtcagcagctccaacag
atgctgcagaactttcagcagcagccagtgaagccagagaccaacgcccagcctccaccc
cagattattcacccacaggccccaaatgtttctgctggactgggcatggtcgcgccacaa
cctccccttccctcccagcccgcccaactaacccagcctgcccagcagaagacagccttt
gacaagaaattgctggaccggtttgattatgatgatgaaccagaagttggagaagaaaca
aagaaggatgagatctcctcccccccttgtaagcctcttaatttctttatatgctggcat
gtctgtgataccagaaagcggaaagctttgattaaaattatgcagcagcctccagccttt
ccacagcacatggatcactttaaaccacagattaatatacaacaggacatctcacagcag
gttcatcttcctcctaatgggcagctccaggtccacggtttaccgccaggacagagcttt
cctgctgcgatgcctcctatgggccatgtgctgccagggatgtccctctctggttcttct
gggcctccaggcttccctggggtttaccatcaccagaatgcagcccagcaacaacaggat
ttgccaatggatgtggaccattcatccatgagagatggcagacatggccgaagatcacac
tcaggctccagatctccaaagcgaaggagatcacggtccaattctcgtacacgtcgatcc
aggcacaggcgatcccgctcacgctccagggatcggcgtcatcactcaccgcgctcacgc
tcgcaggagcgcagggagagagagaaggagagagagagacggcagaaaggtcttccacca
attaagagcgagacagtcagcatttgcagcactactctctgggtaggccagctggacaag
agaacacagcagcaagatgttgcctgtttactcgaggagtttgggcagatagagtccatc
aatatgatccctccacgtggctgtgcttatattgtcatgatacacaggcaagatgccttc
agggctctacagaagctcagcaggggaacattcaaagttaaccagaaagccattaagatc
gcttgggctttgaacaagggcataaaggctgactataagcagtactgggatgtggagctg
ggtgtcacctacgtaccttggtctaaagtcagagaggaccagttagaggagcttaaagaa
ggaggaatgctcgatgtggacactttatcaccagagtggagtggcacgaggaaggctctc
gaccacccagaggaactcactcacaatggccgttcagagcaacagcagcctgaggagacg
caagctgcacctgtacccgccccaactgctcctcccacgtaa
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