Oreochromis aureus (blue tilapia): 116332087
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Entry
116332087 CDS
T07295
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03030
DNA replication
oau03410
Base excision repair
oau03420
Nucleotide excision repair
oau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116332087 (lig1)
03410 Base excision repair
116332087 (lig1)
03420 Nucleotide excision repair
116332087 (lig1)
03430 Mismatch repair
116332087 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oau03032
]
116332087 (lig1)
03400 DNA repair and recombination proteins [BR:
oau03400
]
116332087 (lig1)
Enzymes [BR:
oau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116332087 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
116332087 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116332087 (lig1)
DNA replication proteins [BR:
oau03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116332087 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116332087 (lig1)
DNA repair and recombination proteins [BR:
oau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116332087 (lig1)
NER (nucleotide excision repair)
Other NER factors
116332087 (lig1)
MMR (mismatch excision repair)
Other MMR factors
116332087 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
116332087
NCBI-ProteinID:
XP_031610806
LinkDB
All DBs
Position
LG18:complement(26960145..27028479)
Genome browser
AA seq
1015 aa
AA seq
DB search
MQRSIASFFQPKSKDIQKKAAEEPVKKPVKSPLKVQNGVQEAESPIKKVVKRCRQILDSD
DDEAPVVKEQVPSKGQGDKEAPDKTEKKDDAFKAVPTPLSPPSAPATPVTPATPATPATP
ATSASPGTPSTPNSVSPTGIVKRKTARKMFPKRKLNESSSGSESPKEEAEVKEEQGQRNK
RPRVETSASGEGNADEPMEEDTKEERGEKAVTEANNPGDEEVENKSKEEETVEKEEQVEK
KSSDEKEEKAEEAEKKNEAKPKTDDDDEKGPAVAKTEVVEKDTRGTEESPKSQTVKRQKE
AKEQKDKEPARKAPISSFFAPRKAAVKTEKPEKNEGEKKTSPERKRSEEESKDTKGEATS
GQTDYDPSRPKYHPVDHACWKQGQKVPYLAVARTFERIEEDSGRLRNIETLSNLFRSVLL
LSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGL
VAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARY
IVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSL
ILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEA
AFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSE
AVAWDHEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRAL
LRESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHN
WLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFK
DEDLEQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGM
VDPEKGISLRFPRFLRIRDDKKPEDATAAAQIAELYKKQQQIQNQGDKADPEDYY
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacattcagaagaaagct
gcagaggagcctgtgaaaaagcctgtcaagagtcctctgaaggtgcagaacggtgttcag
gaagcagagtcgcccatcaaaaaggttgtgaaacgctgccgtcaaatcctggacagcgat
gatgacgaggccccagttgttaaagaacaagttcccagcaagggacaaggagacaaagaa
gctcctgataaaacagaaaagaaggatgatgcgtttaaagccgttcccacccccctgtct
ccaccatcggccccagccacacctgtaaccccggccacccccgccacccctgccactcca
gccacctctgcttcaccggggacccccagcactcccaattcagtctcccccactgggatc
gtcaaacgcaagactgcaaggaagatgttccctaagaggaagctcaatgagagcagcagt
ggcagcgagagtccgaaagaagaggcagaggtcaaggaggagcagggtcagcgaaacaaa
cggccacgtgtggagaccagtgccagcggtgaaggtaacgcagatgaacccatggaggag
gacacaaaggaagaaaggggggaaaaggcagtgaccgaggctaacaacccaggggacgag
gaggtggagaacaagagcaaagaggaagaaactgtagaaaaagaggagcaggtggagaaa
aagagctctgatgagaaagaggagaaagctgaggaggcggaaaagaaaaatgaagcaaag
ccgaagacagatgatgatgatgagaaagggcctgccgtagccaaaacggaggtggttgaa
aaggacacgcgaggcacagaagagagcccgaaaagtcaaacggtgaaaaggcagaaagaa
gcaaaagagcagaaagataaggagccggccaggaaagcccccatcagcagtttctttgct
cccagaaaagcagcagtgaagacggagaagccagagaagaatgagggggagaaaaagacg
agtccagagaggaagaggtcagaggaggagagtaaagacacgaaaggtgaggcaacctca
ggacaaacagactatgatccatcgagaccaaaatatcatcccgtggaccacgcttgttgg
aaacagggccagaaagtgccctacttggcagtggctcgcacctttgagaggattgaagag
gactctggcaggctgagaaacatcgagacgctgtcaaacctgtttcgctctgtgctgctg
ctctccccagatgacctgctctgctgcgtgtatctgtgtctgaaccaactcggtcctgcc
tatctagggatggagctcggtgttggcgagacggtgctgatgaaagctgttgctcaagcc
actgggcgacaattggacaaaatcaaagcagaggcacaggagaaaggagatttgggccta
gtggccgagagctcccgtagcaaccagcgcatgatgtttcagccggccagtctgacagca
gggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatgaat
aagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttcagaggcccgctac
atagtcaggtctctggctgggaagctgaggattggtcttgctgagcaaagtgtgctctct
gcactgagccaagctgtatgcctgaccccacctggacaaggttttcctcccgctgtgatc
gacgcagggaagggaatgagtgctgagagcaggcgggcgtggattgaagagaagagtctc
attctcaaacagacttactgcgagatgcccaattacgacgttctgatccccgttttgcta
aaagagggcatagaccagctgcccaatcactgcaagctcactccaggtgtaccactgaga
cccatgttggctcacccaactaagggtgttggcgaagtgatgaagaagtttgacgaggca
gcgttcacctgcgagtacaaatacgatggcgagcgtgcacagattcacattttggagagt
ggcgaggttcgaatattcagccgcaaccaggaagacaacaccagcaaatacccagatatc
atctcccgcattcccaaggtgaagaaggactctgttgtatcctgtgtcctggactctgag
gcggtggcctgggatcacgagaagaaacagatccagcccttccaggtcctcaccactcgt
aagagaaaggatgtggatgcctcggagatcaaagtccaagtgtgtgtgtacgcctttgac
ctcctctacctcaatggcgagtccctggtgcgacagccattgtgtcggcgtcgggctcta
ctgagagaaagcttctcagaggtggagggggagttcgtgtttgcccgatccatcgactcc
gacaacaccgacaccatcgccgagttcctggagcaatctgtccgagactcctgcgagggc
ctcatggtgaagactctagagaaggatgccacctatgaaattgccaagcgctctcataat
tggctcaagttgaagaaggactacttggagggagttggagacacagtggacctgtgtgtg
attggggcctatctggggaaaggaaaaaggacaggcacctatgggggcttcctgctggct
tgttacgatgaagaaaatgaagagttccagtccgtctgcaagatcgggacaggcttcaag
gatgaagatctggagcagcattacaagttcttaaaggagcacatcctgcctaagccccgt
gcttactaccgcgttgaccaatcagccgagcccgacgtgtggctggatgctgtgcaggtt
tgggaggtgaagtgcgctgacctctcactgtctccggtctacaaagctgcaatgggaatg
gtggatccagagaagggcatttctctgaggttccctcgcttccttaggattagagacgac
aagaagcccgaggacgccacggccgcagctcagatcgccgagttgtacaagaagcagcag
cagattcagaatcagggggataaagctgacccagaggactactactga
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