Oreochromis aureus (blue tilapia): 116332834
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Entry
116332834 CDS
T07295
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oau03000
]
116332834 (rc3h1b)
04121 Ubiquitin system [BR:
oau04121
]
116332834 (rc3h1b)
Transcription factors [BR:
oau03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116332834 (rc3h1b)
Ubiquitin system [BR:
oau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116332834 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-C3HC4_2
zf-CCCH_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
116332834
NCBI-ProteinID:
XP_031611762
Ensembl:
ENSOABG00000021537
UniProt:
A0A668VDL6
LinkDB
All DBs
Position
LG18:complement(15067549..15085847)
Genome browser
AA seq
1105 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLLSDDPLDVAVTRKPSPL
ANGTGGSSLPTLIARGTDPVSYELPRKSVKMDGGSPSAPGSPPDVLDKRGMTMPPHPLAH
SRISAENLPVVPRGSPVYPQQQLAEMYGDTRAPPSASQYEPQPYSAGYPYQQPPQYVPRD
YIRNPPPHSESGPPYPDPYPGYPPERTYQAPHSGQQFSYPHPSHYDRGRHMPYSGPPPPP
QPYVPPPSTGHSNSVYHPEPSTRDRYAADGYYPPGAQPMNMRPYVRGPSCSGPQASLDYL
HRRRQELLSQLEERKVISPPPFAASPTLTHPFPNDYPPDYDEDNSKAIPKCRLANYPGQY
SPWSCETIGSYIGTKDPKPKDVMVGPPVEMMNVDAKDLREPSLEAPRKGTEVKDDDPIIP
FGTLPTVSRFGAISRTSKTGYQTTGPVQAMVSTPQNPNSKHMAMPAEYTYGSHGGWGGTS
YPTHQNASSSQGHFSDRLPMAASDREQLKIELQQVNQQISQQTQMHSMEAASNSLLLQRE
ASALATHPGQGQAAVASQQQQPKWPSGGASATAVSSEQLSLELHQVEKEIGKRTREMAME
NQVVHDVQQYKMKPAENGQPDHKTPLEEISLALAEVSNGSSSLPESAVGGSMLSLTNKAS
ALSLCSDPGVTGSEMQKNGVVHSCS
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccgatctgcacacagaca
tttgaggaaactgttcgcaggcccatcagcttaggctgtggacatacagtctgcaagatg
tgcctgaacaagttgcaccgaaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagttacctgtcaacacggctctgttgcagttggtgggaggccaggttcctaag
gctcagccagttgctttgataacaagtccagaggactcgcaacattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtaggg
ctgagcagcaccgctcagagcatgctgagtcgacccatgcagaggaaactggttactctg
gtccactgccagctggttgaagaagaaggccgtgttagagccatgagagcggctcgctct
ctgggcgagcgaactgtcactgagctcatcttgcagcaccagaatccacagcagctctcg
tccaacttgtgggctgctgtccgtgcacgaggatgtcagtttctcggcccagccatgcag
gaagaagccctaaagttggtcctccttgctcttgaggatggctctgctttgtcaagaaag
gtgctggttctatttgtagtccagaggcttgagccacgtttccctcaggcttccaaaact
agcataggccacgttgtgcagcttctctacagggcttcctgtttcaaggttaccaaacgt
gatgaagattcatccctaatgcagctgaaagaggagtttcgtacttacgaggctctacga
cgggagcacgactctcagattgttcagattgctatggaaggtggattgcggattgctcct
gaccagtggtcttctcttttgtatggggatcagtctcacaagtcacacatgcagtctatc
atagataagctgcagactccagcatcttttgctcagagtgtccaggagctgacaattgcg
ctgcaaaggactggagacccagccaacctaaacaggctgcggccccatctggaactcttg
gccaacattgatcccagtcctgatgctcctcctcctacatgggagcagcttgagaagggg
ttggtagcagtgaaaacagtggtacatggcctggtagactttatccagaaccatagcaag
aaaggagccgatcctcaacagcctcctcagcacagcaaatacaagacttacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgcacactctcag
gaagaactagagaagtatcgtaagatgaacaagcgtctggcagctcgcctccctggctca
ggaggactcttgtcagacgatcctctcgatgtagcagtgacccgaaagccttcacccttg
gccaatggaactggtggatcctctttgcccacgctcattgctcgtggcaccgacccagtc
tcatatgagctgccgcgtaaatctgttaagatggacggagggagtcccagtgcaccagga
tcgcctcctgatgtcctggacaaacgtggcatgactatgccacctcatcccctagcccac
tccaggatttcagcagaaaacctgccagtggttcccagaggatcaccagtctacccccag
caacagctcgctgagatgtacggtgacactcgtgcaccaccttctgcctctcagtatgag
ccccaaccgtattctgcaggttacccctaccagcagccaccacagtatgttccaagagat
tacatccgtaaccctcctccgcatagtgagtcaggacccccttacccggatccttaccct
ggttaccctcctgaacgaacctaccaggcccctcactctggtcaacaattctcctaccct
catccttcacactatgacagaggtcgccatatgccctacagtggtccaccacctccccca
cagccttatgtgcccccaccatcaacagggcattccaactctgtttaccacccagagccc
agtacccgggatagatatgcagcagatggctactatccaccaggtgctcaacctatgaat
atgaggccctatgtgagggggccatcatgtagtggtcctcaagccagcctggactatcta
catcgacgccggcaggagctgttatcccagctggaggaaaggaaggtcatttcgcctcca
ccttttgctgcttcacccactcttacacatcccttccccaacgactaccctcctgattat
gacgaggacaactccaaagcaattccaaaatgcagactagccaactatccggggcaatac
tcgccctggtcttgtgaaactattggctcatacattggcacaaaagatcccaaacccaaa
gatgttatggttggtcctcctgtggagatgatgaatgtggatgctaaagacctgagagaa
ccgtcgttggaggcccctcggaagggcacagaagtaaaggatgatgaccccattattcca
tttggtaccctgcccactgtgtcgcgctttggggccatctctcgcacctcaaagacaggc
tatcagaccactggacctgtgcaggccatggtctccactccccagaacccaaattctaaa
cacatggccatgccagcagaatacacatatggaagccatggaggatggggtggaacttca
taccccacccaccagaatgcctcctcctctcagggacattttagtgaccgtctacccatg
gcagcctcagacagagagcagttaaagattgagctacagcaggtgaaccagcagatcagc
caacagacacagatgcacagcatggaggctgccagtaattctttactcctgcagagggag
gccagtgcattggctactcaccctggccagggccaggcagcagtagcctcacaacagcaa
caacccaagtggccatcagggggagcaagtgcaacagctgtctccagtgaacagcttagc
ctggagcttcaccaggtcgagaaagagatcggcaaaaggacccgtgagatggctatggaa
aaccaggtggtccatgatgttcagcagtacaagatgaaacctgctgagaatggacagcca
gaccataagactccactggaagaaatctccttggcgcttgctgaggtgtcaaatggctcc
agcagtctgccagaaagtgcagtgggcgggtccatgctgtcactgacaaataaagcatct
gcattgagcttatgttcagatccaggtgtcactggttcagagatgcagaagaatggtgtt
gtccattcctgctcttag
DBGET
integrated database retrieval system
