Oreochromis aureus (blue tilapia): 116332859
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Entry
116332859 CDS
T07295
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04382
Cornified envelope formation
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04518
Integrin signaling
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116332859
04518 Integrin signaling
116332859
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116332859
09142 Cell motility
04820 Cytoskeleton in muscle cells
116332859
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116332859
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oau04147
]
116332859
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116332859
Exosome [BR:
oau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116332859
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116332859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116332859
NCBI-ProteinID:
XP_039458798
UniProt:
A0AAZ1XKR2
LinkDB
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Position
LG18:14965618..14989595
Genome browser
AA seq
1649 aa
AA seq
DB search
MGTPTLIIPIILFATMLVMTDGKKCVCNRRSRCRCDGVKGSRGDKGFPGNPGSPGLTGRP
GPDGPTGPMGLKGNTGHDGPAGPKGDPGLEGKEGFAGSHGLPGVPGLQGPSGPPGAPGCN
GTDKGEDGPPGIHGTSGPDGLPGPPGRPGSKGESWIPGSSQPGSRGPPGRDGQPGDPGLP
GYEGQPGEPGPRGSVGCPGRRGPPGPKGQEGISGSPGPQGPKGRQGPPGPPGPKARIKEL
ASGGLVLKGIKGDKGDTGEKGYKGSTGEPGYGQYSKGAKGDRGLPGPEGKPGKDGDPGPR
GFLGRPGPRGDPGYPGVPGVPGEKGNRGPPGPSGDTEPIKGYMGDPGPQGPPGLPGPRGI
VGFPGPQGPPGLGFDVPGLRGPKGFPGLKGDSGEPGADYIRPPGPDGEPGDQGPPGDQGP
PGIPEDRTNRVTKGLPGIKGPMGYDGVFGMKGQKGDPCYECTGSGFPGPPGPRGETGPPG
FNQPQGDKGDPGFPGPKGLPGRPGPIGEAGFPGRKGEKGESYSFGAPGPKGEKGDQGQLG
RPGDPGLPGRPGSTGRKGNPGPPGDPYLFSGETGDRGVQGPPGPLGRPGPDGYSGPVGYG
PAGPPGMKGDNGVPGFPGLPGIPGEKGEPGVIYSKGLPGPPGLTGWPGSPGSPGHPGAPG
LLGLPGIPGQKGERGPLSFPGMPGKQGQKGDKGQPGVPGPPGRGSPGQPGQEGPPGPPGP
KGDSNLGHPGPPGFPGLPGEDGDPGPPGDPGNPGLPGYPGLTGSPGFPGEKGVKGSEGLP
GLPGSKESCKGLPGPSGQPGPSGYEGPQGPNGFPGEKGNQGLPGFSIPGPAGEPGFPGPS
RTGSQGHHGQKGIKGQNGLPGQPGPRGDPGPDGLPSGYGPDGLPGIAGPPGQRGDPGPDA
PRGPPGPPGMNGDQGPKGAPGAPSPQNCPVNSGDPGPPGNPGLAGPSGDPGRNGSKGWRG
KVGAPGDPGPRGSPGDPGLDGLLTSPGFKGHPGAPGDAGLRGPPGPKGIKGDRGIPGKPG
RDGDQGKTGCKGATGEPKYNGVGPPGPAGQKGEPGLTNTNLMKGQKGQPGIAGTEGLPGI
FGLKGDPGPTGLNGPSGSQGPEGSDGPPGCKGQRGPNGPQGNVGPTGNRGFPGLKGSQGL
DGIPGPAGQKGETILIEGSPGKRGDPGQPGPPGNPGLPGLSVTGIPGLTGDKGIPGPHGI
PGPRGSPGREEACLPGDPGEPGYPGRKGCFGPPGPPGTAGPGLKGDRGDPGLPGSQGNPG
EPGDPGPQGPPGAIGRPGGPGLRGDPGLPGFPGPAGKIGEPGYIPGPPGQPGDPGIPGPP
GRKGEETFRKVILEPGAQGPPGAPGTRGPPGRTGPPGPPGPPGQRGIKGMQGFSPPGLPG
FTGHKGDKGRAGLPGPDGRPGTPGHKGPAGLPGRTGPTYADSFLIVRHSQSIHPPKCPHG
TCFIYSGYSFLFINGYKRAHGQDLGTTGSCLPSFSTMPFLFCDTENTCRYASRNDYSYWL
STDTPMPMNMVSISGEMLKSYISRCSVCETTSNVIAIHSQRTRIPECPRGWESLWTGYSF
IMQTGAGAEGSTQPLISPGSCLENFRQVPFIECHGRGTCNYYPDSYSYWLASLDPNNMFG
KPIPQTVKGPFLESIISRCRVCRKPRASR
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgggaactccaacactcataattcctataatcctgtttgctacaatgctggtgatgact
gatggaaaaaagtgtgtgtgcaacagaagatcaaggtgccgctgtgatggagtgaaaggc
agcaggggagacaaaggatttccaggaaatccaggttcccctgggctaacaggacgtcct
ggaccagatggtcccactgggccgatgggactaaagggaaacactgggcatgatggacca
gcaggaccaaaaggcgatccgggactcgaaggcaaagaggggtttgctgggagtcatggc
ttaccaggtgtcccaggcttacaggggccttcgggccccccgggagccccaggctgcaat
ggaacagacaagggggaagacggacctcccggtatacatgggacctccggtcctgatgga
ctgccaggtccaccgggtcggcctggatctaagggtgaatcttggataccaggcagttca
caaccagggtcccgtggaccacctgggagggatggacagccgggagatccaggtttacct
ggatacgaaggacaacctggtgaacctggaccaaggggatctgttggctgtcctggacgt
cgagggcctccaggaccaaagggtcaggaaggcattagtggttccccaggacctcaagga
cctaaggggagacaaggcccaccaggtccacctggaccaaaagctcggatcaaggagctt
gcctcagggggtctcgtgttaaaggggataaaaggagacaagggagatacaggagaaaag
ggctacaaaggttcaacgggagaacctggttatggacaatatagtaaaggcgcaaaagga
gacagaggattgccaggtccagagggaaagccgggcaaggatggtgatcctggaccacgt
ggatttctgggaaggcctggccccagaggggatccaggatatccaggagtgccaggagtg
ccgggtgaaaagggaaataggggtccgcctggcccaagtggagatactgagccaatcaaa
ggatacatgggagatcctggtcctcagggcccccctggacttcctgggcctcggggtatt
gtgggctttcctggaccacaaggacctccaggattaggttttgatgtgcctggcctacgt
ggtcccaagggctttccaggcctaaaaggtgattctggggagcctggggctgattatatc
agacctccgggtccagatggagagcctggtgaccaaggacctcctggagatcagggccca
cctggaatccctgaagacagaactaacagagttaccaagggtctgccaggaattaaagga
cccatgggatacgatggggtgtttggaatgaaaggacaaaagggggatccctgttatgag
tgtactggatcaggatttccaggaccaccagggccccggggtgaaactggccctcctggc
ttcaatcagcctcaaggtgataaaggtgatcccggtttcccaggacctaaaggcttacca
ggaagacctggtccaattggtgaagcaggttttccaggtcgaaaaggagagaagggagag
tcatattcctttggtgctcctgggccaaagggagaaaaaggggaccagggacagcttggg
aggcctggggatccgggtttacctgggcgtccaggatcgacaggtcgcaaaggcaatcca
ggacctccaggggatccatatctcttctctggtgaaacgggagaccgtggagtccaaggc
ccaccaggccctttaggcagaccaggaccagacggctactctgggccagtgggttatgga
cctgctgggcctccaggaatgaaaggagataatggggtacctggctttccagggctgcca
ggaattccaggagaaaagggggaacctggagtcatatacagtaaaggacttcctggccca
cctggattgacaggttggccaggttcacctggaagcccaggtcatccaggggctccaggt
cttctaggactaccaggtataccaggccagaaaggagaacgtggcccgttgtcatttcct
ggaatgccagggaaacaaggacagaaaggtgacaagggccaaccaggtgtcccaggccct
ccaggtagaggttccccaggtcaaccaggccaagaaggccctcctggtcctccgggacca
aagggtgatagcaaccttggacaccctgggcctccaggctttccagggcttccaggtgaa
gatggagatccagggcctccaggtgatcctgggaatcctggcttacctggatatccaggg
ctaactggcagtcctggttttccaggagaaaagggagtaaagggttctgaagggcttcca
gggctacctggtagcaaagaatcatgtaaaggcttgcctgggccaagtggacaaccagga
ccaagtggttatgaaggacctcaaggacctaatggctttcctggtgagaagggaaatcaa
ggtttgcctgggtttagtattcctggccctgctggtgaacctgggttccctgggccatca
agaacgggttcacaaggacatcatggacaaaaaggaatcaaaggacaaaatggcctacct
ggtcaaccaggacccagaggagaccctggaccagatggattgccatcaggatatggacca
gatgggttgcctggaattgcaggtccaccgggtcaaagaggtgaccctggcccagatgcg
cctagaggtcctccaggccccccaggtatgaatggagaccaaggtcccaaaggtgcccca
ggagctccatcaccacaaaattgtcctgtgaactcaggggaccctggtccaccaggtaac
cctggtctggctggtccaagtggagatcctggcagaaatggatcaaaagggtggagagga
aaagtgggagcaccgggggatcctggaccaagaggctcaccaggtgatccagggttggat
ggattattaacatcaccggggtttaaaggacatcccggagctccaggagatgcagggctg
agggggcctccagggccaaagggaataaaaggagatcgaggaataccgggaaaaccaggg
cgagatggtgaccagggtaaaactggttgcaaaggagctactggggaaccaaagtacaat
ggagttggaccacctggaccagcaggccaaaagggtgaaccaggattgactaatactaat
ttgatgaagggtcagaaaggacaacctggaattgcaggaacagagggtttaccaggaatt
tttggactcaagggagacccaggacctactggactaaatggtccctcagggtctcaaggg
ccagaagggtcagatggccctccaggttgcaaagggcaacgcggacctaatggaccacaa
ggtaatgtgggtccaacaggaaatagaggatttccaggtctgaaaggcagccagggcctg
gatgggattcctggcccagccgggcagaaaggggagactatcttgatagaagggagtcct
gggaagcgtggtgaccctggtcagccaggtcctcctggaaatcctggcctccctgggttg
tctgttacagggattcctggactaacaggagacaaaggaattccaggtccacatggcatc
cctggcccaagagggtcacctggaagagaagaggcatgtcttcctggcgaccctggcgaa
cctggatatcctgggaggaaaggctgctttggcccacctggtcctccaggtacagcaggg
cctgggttaaaaggagacagaggggacccaggtcttccaggaagccagggtaatccaggg
gaaccaggagatccaggcccacaaggaccacctggtgcaataggcagacctggaggccca
gggctaagaggtgacccaggtcttccaggattcccaggacctgctggtaaaattggagag
cctgggtacatccctggccctcctggtcagccaggggacccaggtattcctggaccacca
gggcgtaaaggtgaggaaacatttagaaaagtgatacttgaaccaggagctcaaggccct
cctggtgcccctggcacaaggggacctccaggaagaactggtccaccaggaccaccaggc
ccaccaggccagcgtggtatcaaaggaatgcagggtttcagcccacctggtctgcctgga
tttacaggccacaaaggagataaaggaagagcagggctgccaggtcccgatggcagacct
ggaactccaggtcataagggtcctgcaggtttgcctggcagaaccggtccgacttatgcc
gacagtttcctgatagtcaggcacagtcagagcatccacccccccaaatgtcctcacggc
acttgcttcatctacagtggttactctttcctcttcatcaatggatataaaagagctcat
gggcaggaccttggcaccacggggagctgtctgcctagtttctctacaatgccttttctg
ttctgtgacactgaaaatacctgccgctatgcttctcgtaatgactattcatactggttg
tccactgacactcccatgcctatgaacatggtttccatatcaggagaaatgctgaaatcc
tacattagcaggtgctcagtgtgcgaaaccacctccaatgtcatagccatccacagtcag
aggactcgcataccagaatgtcctagaggttgggaatcactgtggactgggtactctttc
atcatgcaaacaggtgctggagcagagggatccacgcagcccctgatttctcctggctca
tgtctggaaaatttccgccaagtgccctttatagagtgtcacggcagggggacgtgtaac
tactatcctgattcctatagctactggctggcctccctcgaccccaacaacatgttcggt
aaacccatacctcagacagtgaagggacctttcctagaaagcatcatcagccgctgccga
gtctgcagaaaacccagggcatcaaggtga
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integrated database retrieval system
