Oreochromis aureus (blue tilapia): 116332859
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Entry
116332859 CDS
T07295
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116332859
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116332859
09142 Cell motility
04820 Cytoskeleton in muscle cells
116332859
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oau04147
]
116332859
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116332859
Exosome [BR:
oau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116332859
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116332859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116332859
NCBI-ProteinID:
XP_039458798
UniProt:
A0AAZ1XKR2
LinkDB
All DBs
Position
LG18:14965618..14989595
Genome browser
AA seq
1649 aa
AA seq
DB search
MGTPTLIIPIILFATMLVMTDGKKCVCNRRSRCRCDGVKGSRGDKGFPGNPGSPGLTGRP
GPDGPTGPMGLKGNTGHDGPAGPKGDPGLEGKEGFAGSHGLPGVPGLQGPSGPPGAPGCN
GTDKGEDGPPGIHGTSGPDGLPGPPGRPGSKGESWIPGSSQPGSRGPPGRDGQPGDPGLP
GYEGQPGEPGPRGSVGCPGRRGPPGPKGQEGISGSPGPQGPKGRQGPPGPPGPKARIKEL
ASGGLVLKGIKGDKGDTGEKGYKGSTGEPGYGQYSKGAKGDRGLPGPEGKPGKDGDPGPR
GFLGRPGPRGDPGYPGVPGVPGEKGNRGPPGPSGDTEPIKGYMGDPGPQGPPGLPGPRGI
VGFPGPQGPPGLGFDVPGLRGPKGFPGLKGDSGEPGADYIRPPGPDGEPGDQGPPGDQGP
PGIPEDRTNRVTKGLPGIKGPMGYDGVFGMKGQKGDPCYECTGSGFPGPPGPRGETGPPG
FNQPQGDKGDPGFPGPKGLPGRPGPIGEAGFPGRKGEKGESYSFGAPGPKGEKGDQGQLG
RPGDPGLPGRPGSTGRKGNPGPPGDPYLFSGETGDRGVQGPPGPLGRPGPDGYSGPVGYG
PAGPPGMKGDNGVPGFPGLPGIPGEKGEPGVIYSKGLPGPPGLTGWPGSPGSPGHPGAPG
LLGLPGIPGQKGERGPLSFPGMPGKQGQKGDKGQPGVPGPPGRGSPGQPGQEGPPGPPGP
KGDSNLGHPGPPGFPGLPGEDGDPGPPGDPGNPGLPGYPGLTGSPGFPGEKGVKGSEGLP
GLPGSKESCKGLPGPSGQPGPSGYEGPQGPNGFPGEKGNQGLPGFSIPGPAGEPGFPGPS
RTGSQGHHGQKGIKGQNGLPGQPGPRGDPGPDGLPSGYGPDGLPGIAGPPGQRGDPGPDA
PRGPPGPPGMNGDQGPKGAPGAPSPQNCPVNSGDPGPPGNPGLAGPSGDPGRNGSKGWRG
KVGAPGDPGPRGSPGDPGLDGLLTSPGFKGHPGAPGDAGLRGPPGPKGIKGDRGIPGKPG
RDGDQGKTGCKGATGEPKYNGVGPPGPAGQKGEPGLTNTNLMKGQKGQPGIAGTEGLPGI
FGLKGDPGPTGLNGPSGSQGPEGSDGPPGCKGQRGPNGPQGNVGPTGNRGFPGLKGSQGL
DGIPGPAGQKGETILIEGSPGKRGDPGQPGPPGNPGLPGLSVTGIPGLTGDKGIPGPHGI
PGPRGSPGREEACLPGDPGEPGYPGRKGCFGPPGPPGTAGPGLKGDRGDPGLPGSQGNPG
EPGDPGPQGPPGAIGRPGGPGLRGDPGLPGFPGPAGKIGEPGYIPGPPGQPGDPGIPGPP
GRKGEETFRKVILEPGAQGPPGAPGTRGPPGRTGPPGPPGPPGQRGIKGMQGFSPPGLPG
FTGHKGDKGRAGLPGPDGRPGTPGHKGPAGLPGRTGPTYADSFLIVRHSQSIHPPKCPHG
TCFIYSGYSFLFINGYKRAHGQDLGTTGSCLPSFSTMPFLFCDTENTCRYASRNDYSYWL
STDTPMPMNMVSISGEMLKSYISRCSVCETTSNVIAIHSQRTRIPECPRGWESLWTGYSF
IMQTGAGAEGSTQPLISPGSCLENFRQVPFIECHGRGTCNYYPDSYSYWLASLDPNNMFG
KPIPQTVKGPFLESIISRCRVCRKPRASR
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgggaactccaacactcataattcctataatcctgtttgctacaatgctggtgatgact
gatggaaaaaagtgtgtgtgcaacagaagatcaaggtgccgctgtgatggagtgaaaggc
agcaggggagacaaaggatttccaggaaatccaggttcccctgggctaacaggacgtcct
ggaccagatggtcccactgggccgatgggactaaagggaaacactgggcatgatggacca
gcaggaccaaaaggcgatccgggactcgaaggcaaagaggggtttgctgggagtcatggc
ttaccaggtgtcccaggcttacaggggccttcgggccccccgggagccccaggctgcaat
ggaacagacaagggggaagacggacctcccggtatacatgggacctccggtcctgatgga
ctgccaggtccaccgggtcggcctggatctaagggtgaatcttggataccaggcagttca
caaccagggtcccgtggaccacctgggagggatggacagccgggagatccaggtttacct
ggatacgaaggacaacctggtgaacctggaccaaggggatctgttggctgtcctggacgt
cgagggcctccaggaccaaagggtcaggaaggcattagtggttccccaggacctcaagga
cctaaggggagacaaggcccaccaggtccacctggaccaaaagctcggatcaaggagctt
gcctcagggggtctcgtgttaaaggggataaaaggagacaagggagatacaggagaaaag
ggctacaaaggttcaacgggagaacctggttatggacaatatagtaaaggcgcaaaagga
gacagaggattgccaggtccagagggaaagccgggcaaggatggtgatcctggaccacgt
ggatttctgggaaggcctggccccagaggggatccaggatatccaggagtgccaggagtg
ccgggtgaaaagggaaataggggtccgcctggcccaagtggagatactgagccaatcaaa
ggatacatgggagatcctggtcctcagggcccccctggacttcctgggcctcggggtatt
gtgggctttcctggaccacaaggacctccaggattaggttttgatgtgcctggcctacgt
ggtcccaagggctttccaggcctaaaaggtgattctggggagcctggggctgattatatc
agacctccgggtccagatggagagcctggtgaccaaggacctcctggagatcagggccca
cctggaatccctgaagacagaactaacagagttaccaagggtctgccaggaattaaagga
cccatgggatacgatggggtgtttggaatgaaaggacaaaagggggatccctgttatgag
tgtactggatcaggatttccaggaccaccagggccccggggtgaaactggccctcctggc
ttcaatcagcctcaaggtgataaaggtgatcccggtttcccaggacctaaaggcttacca
ggaagacctggtccaattggtgaagcaggttttccaggtcgaaaaggagagaagggagag
tcatattcctttggtgctcctgggccaaagggagaaaaaggggaccagggacagcttggg
aggcctggggatccgggtttacctgggcgtccaggatcgacaggtcgcaaaggcaatcca
ggacctccaggggatccatatctcttctctggtgaaacgggagaccgtggagtccaaggc
ccaccaggccctttaggcagaccaggaccagacggctactctgggccagtgggttatgga
cctgctgggcctccaggaatgaaaggagataatggggtacctggctttccagggctgcca
ggaattccaggagaaaagggggaacctggagtcatatacagtaaaggacttcctggccca
cctggattgacaggttggccaggttcacctggaagcccaggtcatccaggggctccaggt
cttctaggactaccaggtataccaggccagaaaggagaacgtggcccgttgtcatttcct
ggaatgccagggaaacaaggacagaaaggtgacaagggccaaccaggtgtcccaggccct
ccaggtagaggttccccaggtcaaccaggccaagaaggccctcctggtcctccgggacca
aagggtgatagcaaccttggacaccctgggcctccaggctttccagggcttccaggtgaa
gatggagatccagggcctccaggtgatcctgggaatcctggcttacctggatatccaggg
ctaactggcagtcctggttttccaggagaaaagggagtaaagggttctgaagggcttcca
gggctacctggtagcaaagaatcatgtaaaggcttgcctgggccaagtggacaaccagga
ccaagtggttatgaaggacctcaaggacctaatggctttcctggtgagaagggaaatcaa
ggtttgcctgggtttagtattcctggccctgctggtgaacctgggttccctgggccatca
agaacgggttcacaaggacatcatggacaaaaaggaatcaaaggacaaaatggcctacct
ggtcaaccaggacccagaggagaccctggaccagatggattgccatcaggatatggacca
gatgggttgcctggaattgcaggtccaccgggtcaaagaggtgaccctggcccagatgcg
cctagaggtcctccaggccccccaggtatgaatggagaccaaggtcccaaaggtgcccca
ggagctccatcaccacaaaattgtcctgtgaactcaggggaccctggtccaccaggtaac
cctggtctggctggtccaagtggagatcctggcagaaatggatcaaaagggtggagagga
aaagtgggagcaccgggggatcctggaccaagaggctcaccaggtgatccagggttggat
ggattattaacatcaccggggtttaaaggacatcccggagctccaggagatgcagggctg
agggggcctccagggccaaagggaataaaaggagatcgaggaataccgggaaaaccaggg
cgagatggtgaccagggtaaaactggttgcaaaggagctactggggaaccaaagtacaat
ggagttggaccacctggaccagcaggccaaaagggtgaaccaggattgactaatactaat
ttgatgaagggtcagaaaggacaacctggaattgcaggaacagagggtttaccaggaatt
tttggactcaagggagacccaggacctactggactaaatggtccctcagggtctcaaggg
ccagaagggtcagatggccctccaggttgcaaagggcaacgcggacctaatggaccacaa
ggtaatgtgggtccaacaggaaatagaggatttccaggtctgaaaggcagccagggcctg
gatgggattcctggcccagccgggcagaaaggggagactatcttgatagaagggagtcct
gggaagcgtggtgaccctggtcagccaggtcctcctggaaatcctggcctccctgggttg
tctgttacagggattcctggactaacaggagacaaaggaattccaggtccacatggcatc
cctggcccaagagggtcacctggaagagaagaggcatgtcttcctggcgaccctggcgaa
cctggatatcctgggaggaaaggctgctttggcccacctggtcctccaggtacagcaggg
cctgggttaaaaggagacagaggggacccaggtcttccaggaagccagggtaatccaggg
gaaccaggagatccaggcccacaaggaccacctggtgcaataggcagacctggaggccca
gggctaagaggtgacccaggtcttccaggattcccaggacctgctggtaaaattggagag
cctgggtacatccctggccctcctggtcagccaggggacccaggtattcctggaccacca
gggcgtaaaggtgaggaaacatttagaaaagtgatacttgaaccaggagctcaaggccct
cctggtgcccctggcacaaggggacctccaggaagaactggtccaccaggaccaccaggc
ccaccaggccagcgtggtatcaaaggaatgcagggtttcagcccacctggtctgcctgga
tttacaggccacaaaggagataaaggaagagcagggctgccaggtcccgatggcagacct
ggaactccaggtcataagggtcctgcaggtttgcctggcagaaccggtccgacttatgcc
gacagtttcctgatagtcaggcacagtcagagcatccacccccccaaatgtcctcacggc
acttgcttcatctacagtggttactctttcctcttcatcaatggatataaaagagctcat
gggcaggaccttggcaccacggggagctgtctgcctagtttctctacaatgccttttctg
ttctgtgacactgaaaatacctgccgctatgcttctcgtaatgactattcatactggttg
tccactgacactcccatgcctatgaacatggtttccatatcaggagaaatgctgaaatcc
tacattagcaggtgctcagtgtgcgaaaccacctccaatgtcatagccatccacagtcag
aggactcgcataccagaatgtcctagaggttgggaatcactgtggactgggtactctttc
atcatgcaaacaggtgctggagcagagggatccacgcagcccctgatttctcctggctca
tgtctggaaaatttccgccaagtgccctttatagagtgtcacggcagggggacgtgtaac
tactatcctgattcctatagctactggctggcctccctcgaccccaacaacatgttcggt
aaacccatacctcagacagtgaagggacctttcctagaaagcatcatcagccgctgccga
gtctgcagaaaacccagggcatcaaggtga
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integrated database retrieval system
