Oreochromis aureus (blue tilapia): 116332862
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Entry
116332862 CDS
T07295
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04382
Cornified envelope formation
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116332862
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116332862
09142 Cell motility
04820 Cytoskeleton in muscle cells
116332862
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116332862
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oau04147
]
116332862
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116332862
Exosome [BR:
oau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116332862
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116332862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116332862
NCBI-ProteinID:
XP_039458795
Ensembl:
ENSOABG00000021568
LinkDB
All DBs
Position
LG18:complement(14929418..14965376)
Genome browser
AA seq
1661 aa
AA seq
DB search
MKSAVTPGTLFALWWMLSLIFFVQQLKAGNTEGPCQGRDCSVCRCLPAKGARGTPGRLGQ
EGPQGLMGLQGHEGLPGEKGRMGAVGSHGPEGTKGSQGKTGAPGFPGRSGLPGHPGAGGE
PGLPGLDGCNGTQGSPGIPGLPGLDGLHGPPGLPGPKGDKGEASYLDPPPGLPGERGRDG
QPGPPGREGFIGPKGYSGPPGPPGPKGLEGAAGDTGSAGDPGKPLTGDAGDEGEQGPPGP
PGPEEVVEYPPGFLSPKGDKGDKGFPGPRGQKGLMGGSGDYYPHELKGEQGVLGFVGFRG
PPGLPGREGLAGPEGSRGQRGLPGISGRTGLKGYPGDPGLPGDTRLPNGSHVRGAKGDRG
FPGQPGLPGDTGSMGIPGPSGPPGLAVGKPGPRGPHGPKGYKGEPGKYGDYSIAVPKGAK
GLPGPKGATGPPGPPGCGDYYCECSDPGDPGDPGPRGSTGNKGLKGIKGSPGICECISGR
GSPGSHGPPGYPGPPGLPGTQGPRGDPGLKGDEGSQGPQGFQGFSGLKGQKGEKGDTFAV
GVKGAKGDIGDPGYRGPPGGTGGSGQDGRDGCVGEPGPPGDGYTGLPGPKGYPGIPGPKG
FPGQAGPPGDGLQGPKGEQGPKGNQGLTGIPGIPGQPGPPGERQKCCPEGEIGPPGPKGE
PGSPGIPGQPGSNGPPGEPGYPGTKGMKGDDGGAQGTGPPGPPGLIGEPGEPGSRGISLE
GFTGLPGFPGPPGRKGCPGDVLPARPGAPGPPGSIGYKGLRGMPGNPGIPGPQGQPGQPG
YKGEPGIDGDPGVPGPIGPPCSRCKLIGPPGPPGPPGNPGVRGIPGNIGQIGLRGDIGPP
GHGRKGSKGVQGPPGLPGPAGPTGSTGLPGDPGTDGWPGQKGERGYPGRAGARGFPGRPG
PPGPRGKQGERGLNGRPGCPGYPGPDGNKGLRGDPGEPGVPCPVNIRKGPPGMIGPAGEP
GLQGPKGTQGMPGDSGSDGWPGPPGIKGIAGVPGRSGRAGPLGDPGIKGFIGPRGYPGND
GDRGDPGLVGYSGIPGRQGFPGVKGDPGPSYGQPGPPGPRGIPGEDGFSAPRGIPGDPGD
PGPRGNPGRPGPSGIPGERGIQGRQGCPGLRGPQGHPGLPGLPGDQGSVGLPGPPGQYGP
PGPPGPPGLDGLYGLTGPKGMKGASGIGIPGPRGPDGFPGVKGVRGYRGPPGTTILGTKG
QRGPPGNPGLPGLPGEPGYPGIICQTPLQGPAGDQGFEGPPGPPGPPGEPGIPGSSLLFK
GDPGPTGPHGLPGVRGRRGLPGPPGLSIHQGPIGPKGEHGPVGLRGLPGPKGQLGAPGPQ
GPRGGTGPPGNKGVKGAPGDSLSIVTANAPPGPPGPPGSPGPVGFQGVMGSPGTPGRKGE
KGPVGSVGLPGITGPPGRNGPAGDPGDVGLPGFPGPQGIPGPPGDQGQPGYRRILSAGFL
LVIHSQSVQVPRCPADTTQLWVGYSLIYLEAQEKAHTQDLGQPGSCLPVFSTMPFSYCNK
AACSYSSRNDKSYWLSTTAPIPMMPLFGQDIVSHISRCVVCETISPVVTFHSQSHTFPSC
PPGWRSLWVGYSFLLHTGAGNNGGGQSLASTGSCLKDFRTHPFIECQGARGSCHYFANLY
SYWLTTVCPAEQFITASPGTIKATDQQRDRTSQCNVCHRER
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgcagttactcctgggactttgtttgctctttggtggatgctttccctcatc
ttctttgtgcagcagctcaaggcaggaaacactgagggcccgtgtcaaggtagagactgc
tctgtatgtcgatgtcttcctgccaaaggtgcacggggcactcccggcagactaggccag
gaaggtccacagggactaatgggactgcagggacatgaagggcttcctggagagaaaggc
aggatgggagcagttggatcacatggcccagaggggactaaaggaagtcaaggaaagact
ggtgctcctggttttcctggtagaagtggtttaccaggtcaccctggagcaggcggtgag
cctgggttgccaggattggatggttgtaatgggacacagggtagtccgggaatccccggt
ttgcctggtttggatggcctccatggcccaccgggattacctggacctaaaggagataaa
ggagaagcttcatatttagatccacctccaggacttcctggtgagcgtgggcgggatgga
cagcctggccctcctggaagagaaggatttattggtcctaaaggttacagtggcccccct
ggccctcctggccctaagggtttagagggagctgcaggtgatacaggatcagcaggtgat
cctggaaaaccactgacaggtgacgcaggtgatgagggtgagcagggcccgcctggccca
ccaggaccagaagaagttgtagaatatcctccaggctttctttcaccaaaaggagacaag
ggtgacaaaggttttcctggcccacgtggacaaaagggcttaatgggtggtagtggtgac
tactatcctcacgaattaaaaggagagcaaggagtcctcggatttgtcggatttcggggt
cctccaggattacctggcagggagggactagcaggacctgagggttctcgaggacagagg
ggacttccaggcatcagtggaagaactggactaaagggttacccaggagatccaggtctc
cctggtgatacacgccttcctaatggaagtcatgtgagaggtgctaaaggtgaccgtgga
tttccaggacagcctggactccccggggacactgggtccatgggcattcctgggccctct
ggcccaccagggctagcagttggaaagcctggtccgcgaggtccccatggtcctaaaggc
tacaaaggagagccgggaaagtatggtgactattccattgcagtacccaagggagctaaa
ggactcccaggacctaaaggtgccacaggccctccaggccccccaggctgtggagactac
tactgtgagtgcagtgaccctggggaccctggtgatcctggacccagaggatctactggg
aacaaagggctcaagggaattaaaggttctccagggatttgcgaatgtatctctggcagg
gggagcccagggtctcatggtccacctggttatccaggccccccaggattacctggaact
caaggaccaagaggggacccaggtctgaaaggagatgagggttctcaaggaccacaaggc
tttcaaggattttctggtttaaagggacaaaaaggagaaaaaggtgatacttttgcagta
ggtgtaaaaggtgccaagggtgacataggtgacccaggatatcgtggtcctcctggagga
acaggtgggtcaggacaggatggacgagatggctgtgtgggagaacccgggccaccaggt
gatggttatacaggattacctggtcctaaaggttacccaggaattcctggacccaaagga
tttcctggacaagcaggtcctccgggtgatggtttacaaggccccaagggagaacaagga
cctaaaggaaatcagggacttactggcataccaggaattcctggacaaccaggacctcca
ggagaaagacagaaatgctgtcctgaaggtgagattggtccccctggtccaaagggtgag
ccaggttcaccagggattccaggtcagccagggagcaatggtccccccggagagccagga
tacccaggcactaaaggcatgaagggagatgatggtggagctcaggggactggaccacca
ggacctccaggtttaattggtgaaccaggtgaaccaggttccaggggaattagtctagaa
ggctttactggccttcctggttttcctggaccaccaggtaggaaagggtgtccaggagat
gtcctcccagccaggccaggtgcacctggccctcctgggagtataggctataaaggactc
cgtggaatgcctggaaacccaggaataccaggcccacaaggccaacctggacaaccaggc
tataaaggagagccagggatcgatggtgaccccggagtccctggaccaataggcccaccg
tgttcacggtgcaaactcatcggcccacccggacccccaggacctccaggaaatcctgga
gtgaggggaataccgggaaacattgggcagataggtctgagaggcgatattggtccacct
ggacatggacggaaaggatcaaaaggtgttcagggtcctcctggtttaccaggaccagct
ggaccaacaggctccactggcctcccaggagatcctggaactgatgggtggccaggacag
aaaggtgaaagggggtatcctggcagggctggagccagaggtttcccaggtcgccctgga
cctcctggaccaagaggtaaacagggtgaaaggggtcttaatggccgcccaggttgccca
gggtatccaggaccagatggtaataaaggtttacgtggagaccctggagagccaggagta
ccatgtccagtgaatataaggaaaggtccaccaggaatgattgggccagctggtgagcct
ggacttcagggtccaaagggcacacagggaatgccaggtgattctggatctgatggatgg
cctggtccaccaggaattaagggtatcgctggagttccaggcaggtcaggaagagcagga
cctcttggagaccctgggattaaaggtttcattggtcccagagggtatcctgggaatgat
ggagatcggggagatccagggctcgtgggatattcaggtattccagggagacaaggattt
cctggtgtcaagggtgatccaggaccatcttatggacaaccaggtccacctggacccaga
ggcatcccaggagaggatggcttcagtgcacctcgagggataccaggagacccaggtgat
ccgggacccagaggaaacccaggacgaccaggaccatcaggcattccaggagaacgggga
atacaaggaagacaaggctgcccgggactccgtggtccacaaggccatccaggtcttcca
ggtcttcccggtgatcaaggaagtgtgggactaccaggcccccctggccaatatgggccc
ccagggccccctggaccaccaggtctagatggactgtatgggcttacaggtccaaaaggg
atgaaaggggcaagtggcataggtatccctggccctcgaggaccagatggttttccagga
gtcaaaggggtcaggggctaccgaggacctccaggaactactattcttgggactaaaggc
caaaggggcccaccaggcaatccaggtctcccaggcctcccaggtgaacctggttaccct
ggtataatctgccaaacacctttgcagggacctgctggagatcaaggatttgaaggacct
ccaggacccccaggtcctcctggagaacctgggataccaggctccagccttttgttcaaa
ggagacccaggcccaactggcccccatggcttaccaggtgttcgaggaagaaggggccta
ccaggaccacctggactttctatccaccaaggccctataggaccaaaaggtgagcatggt
cctgttggtctaaggggtctacctggacccaaaggtcagctaggtgcccctgggccccag
ggccccagaggaggaactggcccccctggaaataagggtgtcaaaggtgctcctggtgac
tctctcagtattgtaacagctaatgctccccctggacctccaggtcctcctggtagccca
ggacctgtaggattccaaggtgtcatgggttctcctggtactccaggtcgtaaaggggag
aagggtccggtggggtctgtgggccttcctggtataacaggtcctcctggtcgtaatggt
ccagctggagatccaggagatgttggtttgcctggatttcctggacctcaaggtatccca
ggtcctcctggtgaccagggtcagccaggctacaggaggatattgagtgctggatttctg
ttagttatacatagtcaatcagttcaggtcccacggtgcccagcagataccactcagctt
tgggtgggatacagtctcatttacctggaggcacaagaaaaggctcacacacaagatctg
ggccagcctggctcctgcctccctgttttctccaccatgccgttctcctattgtaacaaa
gctgcctgttcttattctagtcgcaatgacaaatcctattggctctccacaactgctccc
atacccatgatgccgctatttggccaggatattgtgtcccatatcagccgttgtgtggtg
tgtgagaccatttcacctgtggtgacttttcacagccagagtcatacattcccttcatgc
ccacctggatggaggagtttgtgggtgggatactctttcctcttgcacacaggagcaggt
aataatggtggtggccagtcactggcttctactggtagctgccttaaggatttccgaact
catcccttcattgagtgccaaggggcacggggttcctgtcactactttgccaatctctat
agttattggctgactactgtatgcccagcagagcagttcataaccgcaagtcctggcacc
atcaaagcaactgaccaacagcgagacaggaccagccagtgtaatgtctgccacagagaa
agataa
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integrated database retrieval system
