Oreochromis aureus (blue tilapia): 116333072
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Entry
116333072 CDS
T07295
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116333072 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116333072 (taf4b)
03036 Chromosome and associated proteins [BR:
oau03036
]
116333072 (taf4b)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116333072 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
116333072 (taf4b)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116333072 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
SAGA-Tad1
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
116333072
NCBI-ProteinID:
XP_039455094
Ensembl:
ENSOABG00000024789
LinkDB
All DBs
Position
LG15:39745838..39756362
Genome browser
AA seq
701 aa
AA seq
DB search
MATNNVVTEANKLELQAATGVGDSSVQVRILQVAAKHGPVTAVQPPPTAASISQSDCVSA
PPKVIPSGQPTPSAVTVSGPRTSPPSVMVVANAGGVSAGNQQITKQPQNQVASVKQVTTT
GRTVLITVPRSATAQPVTPRLPQAATSHLPANIQIPPGMMLIRSDSGQLMLVSQQALAQA
QQGQRLICGQPTRILAPQVSAGAESKRNENVTVIKMMPSSSFQQAAPVQKTAVVIGVASK
PALVQTVNVVSERGSHAGTQAAGVEVKKESAPTFSKETLESVKKCKNFLVTLIKLASSDS
RSVNMANNVQGLVRSLLEGKLEAEAFTEQLYDTLKSTPQPCLVPFLKKSLPAVRCLTADP
QLFIQKASASTRPPTTTSSSIKQSNTEIGKTLQNRQQVFQTRGVALRPGLTTLIQPRSCI
SKKPTSRHIVGYSGKTFSGFSVKQPFAREPPNSTKFAFKDSSGSYKEDDDINDVTSMAGV
NLREENAQILTSTVGAVVQSCQDQLFLSTQPVLSRILHTGQALGVTDVGPEVVALVSHAT
QEFLRGLLEKLTVMAEHRKTTLKQNSWHTQVGDVRSQLRFLEAIETLQKKKRDEEERERV
LRFARSRSHTEDPEYQQLKQKAKELQQIEEAQLQQREANLAALAAIGPRRKRPLDQTDSP
VCVLPRPGVHRVTRVILKDLLVCMEEEPFLRHSLTLYKAML
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaataacgtggttactgaagctaacaagttggaactccaggcagcaaccggg
gttggagactcttctgttcaagtcaggatactacaagtcgctgccaaacatggtcctgtc
actgctgttcagcctccacccactgctgcaagcatctcacagagtgactgtgtctcagcc
ccacctaaagtcatccccagtgggcagcctacaccgtctgcagtgacagtgtcagggcct
cgcacctcacctccttctgttatggtggttgcaaatgcaggaggagtgagtgcaggtaac
caacagataactaaacagcctcagaaccaggtggcctccgtgaaacaggttacgaccaca
ggaaggacggtgttgataactgttcccagatcagcaactgcacaaccagtcactcctcga
ctgccacaggcggccacctcacatctcccagccaatatccagatacctccaggtatgatg
ctgatccgcagtgacagtgggcagctgatgctagtgtctcagcaggccttggctcaggct
cagcagggacaaagacttatctgtggtcaacccaccaggatacttgcaccgcaggtgtct
gcaggagctgaaagtaaaaggaatgagaatgtaacagtgatcaagatgatgcctagttcc
agttttcagcaagcagcaccagtccagaagactgctgtggtcattggtgttgcctccaaa
ccagctctagtccagaccgtgaacgttgtgtctgagcgaggcagccatgctggcactcag
gcagcaggcgtggaagttaaaaaggaatcagcacccacgtttagcaaggagacgctggaa
agtgtgaagaagtgcaagaacttcttggtaacgctgatcaagctggcctccagtgactcc
agatctgtgaacatggctaacaatgtccaaggactggtcaggagtctgctggaaggaaaa
ctggaagcagaagcgtttacagagcagctctatgacacgttgaagtcgactccacaaccc
tgcttggtgccttttctcaagaaaagtcttcctgcggtgcgttgcctcactgcagacccc
cagttattcatccaaaaagcttcagcttccacacgcccccccacaacaacgtcttccagc
ataaagcagtccaacactgagataggaaaaaccctccagaacaggcagcaggttttccag
actcgaggagtggctctgagacctggcctaacaacattaatccagcccagaagttgcata
tctaagaaacccaccagcaggcacatagtgggatactcaggaaaaaccttctcaggtttt
tcagtgaagcagcccttcgctcgtgagccacctaattctaccaaatttgcattcaaagac
agttcaggatcttacaaagaagatgatgatattaatgatgtcacctccatggctggagtc
aacctgagagaggagaacgcacagatcttgaccagcacggttggcgctgtggtgcagtcg
tgtcaggatcagctgttcctgtcgactcagccggtgctcagcagaatccttcacacagga
caggctctgggagtaactgatgttggtccagaggtggttgctttggtttctcatgctact
caggagtttcttcgtgggctgttggagaaactcactgtaatggcagagcaccgcaagaca
accctgaagcagaactcgtggcacacccaagtcggtgatgttcgttctcagcttcgcttc
ctcgaggcaattgagaccttgcagaagaagaagagagatgaggaggagagggagagagtg
ctgcgttttgccagaagtcgctcacacactgaagatccagagtatcagcagctcaagcaa
aaagccaaagagttgcaacaaatagaggaagctcagctgcagcagagagaggccaacctc
gctgctctggctgccattggcccgcgcaggaagagacccctggatcagaccgacagcccg
gtgtgtgtgctgcccagaccaggtgttcacagagtgacccgggtgatcctgaaggatctg
ctggtgtgtatggaggaggaaccctttctgcgtcactctctcaccctctataaagccatg
ctttga
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