Oreochromis aureus (blue tilapia): 116333484
Help
Entry
116333484 CDS
T07295
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116333484 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116333484 (smarcc1a)
03036 Chromosome and associated proteins [BR:
oau03036
]
116333484 (smarcc1a)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116333484 (smarcc1a)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116333484 (smarcc1a)
PBAF complex
116333484 (smarcc1a)
GBAF(ncBAF) complex
116333484 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
116333484
NCBI-ProteinID:
XP_031612595
Ensembl:
ENSOABG00000006438
UniProt:
A0A668TA25
LinkDB
All DBs
Position
LG11:complement(31422749..31447729)
Genome browser
AA seq
1138 aa
AA seq
DB search
MATAATTAGGTGSGGPTTGPVGGLTAVGRKKDGGPSAKFWESSDTISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLHFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVYLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHIIYPSLSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDTW
VSASELDGDPEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSISKNANSKKDSENTPVKGGNVADLDDMEDESVMSGGKD
DEEQGKSEINRLDANEDNVTEQTHHIVIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAES
RPLPMGPPPTPHFTVLADTPSGLMPLNHRPQPIPPPQPMPNFADKGKDKPIDLQNFSLRS
DLYNKKSIKGKAGSTTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESTEATLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARTTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMETD
SDSQQADKGELKDEAEKPSESAEKSDKTEATEKVKKEGVEASEREEENEEGGEAKTAQAD
KDKEESMETSSSDQEKEKEEKTPTEEGEDKSKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAAAAQAQGQGQGQGPGAGPHSGPPPPGMHPGGPT
PHHGGPPPHHGAPPPHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMPGRLM
SGPPTAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPDAIPPAPVGPPAPPSGRVADN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcgggcggaccgaccactggcccc
gtcggtggtttaaccgcagtgggacgaaagaaagatggtggtccgtctgcgaaattttgg
gaaagttcagacacgatatcccagctggagactgtgcgactctggatcggaaagcactac
aagaagtacgtccagaatgactccccctccagtaaatccctggcaggtctcgtggtccag
ctgctgcatttccaggaagacgcatttgggcgaagagtcaacaatcctgctcttacaaag
ctacctgccaagtgtttcctggatttcaaggcaggaggtgctctctgtcacattctggga
tctgtctacaagtttaagagcgagcaaggctggcgaagatttgacctacagaatccctcc
cggatggacaggaacgtggaaatgttcttaaatgttgaaaagaacctggtccagaataac
tgcttgactcgacccactgtttacctgtcgccagacatcgagcagaaacaggctagtaag
ctcaaagacatcatcaaaagacaccagggctccattactgatgacaaatcgaaggccacc
catattatttacccatcactatcccagcaagaagaagaggagtggctgcgtcctgtcatg
aggaaagacaagcaggtgctggtccattggggtctctacccagacagctacgacacctgg
gtgtcagccagtgagctagacggtgacccagaggacccacccagcactgacagaccttgg
aaggtccatgccaagtgggttttagacaccgatgccttcaatgagtggatgaatgaggaa
gactacgaagtggatgagaacaagaagccagtcagcttccgccagaggattttccccaaa
gaggaagagtcttcccgtacacctgatcgcaaggagcgcaaggccaactctgcgggaaag
aagaggaggcgctcaccctctccgccgagcactccagccgagtcccgtaagaagggaggc
aagaaggggaacccgggacctcactggaaacgacggggccacagaggagaagaggaggac
actgaagaggacatgacaaaagacatggacgattcctcagctggtgctagcatggaggag
ggcagtatctccaagaatgcaaattcaaagaaagacagcgagaatacaccggtcaaagga
gggaatgtggccgacttggatgacatggaagatgaatctgtgatgtctggtggaaaggat
gatgaggaacaaggcaaaagtgaaataaaccgactggatgccaatgaggacaatgtgact
gaacagacgcatcacatcgttatccccagctatgctgcttggtttgactacaacagcatc
catgagatcgagagacgagccttgccagagttcttcaatggaaagaacaagtccaaaact
ccagaaatatacctggcctatcgcaacttcatgatcgacacgtatcggctgaatcctcag
gagtacctcacttccacctcctgccgcaggaacctgactggggatgtttgcgccatcatg
agggtacatgcattcttggagcagtggggtttggtgaactaccaggtcgatgcagagtct
cgtccattgccgatgggcccccctcccactcctcattttactgtgctggctgacacaccc
tctggcctcatgcctcttaaccacagaccccaaccgattcctcctccacagccaatgccc
aattttgcagacaaaggcaaagacaagcccatcgacctgcagaactttagccttcgttct
gacctctacaacaagaaaagcatcaagggtaaagcaggcagcaccaccagagaatggact
gagcaggagactctgctgctgctggaggccctggagatgtataaagatgactggaacaaa
gtttcagagcatgttggttcacgcacccaagatgagtgcatcctgcacttcctgcgattg
cccattgaagatccatacctggagagtacggaggccacactcggtcctcttgcctatcag
cccatacctttcagccagtctgggaacccagtcatgagcacagtagccttcctggcatct
gttgtggatcctagagtggcatctgctgcagccaaggcagcactagaggagttctctcgc
gtgcgcgaagaggtgccagctgagttggtggaggctcacgtgaagaaggtgcaggaggcg
gccagaactactgggaaggtggatcctgccttcggcttggagagcagcggcattgctgga
actgcccccgaggagccagaaaagactgaaaccacagagccggaaaagatggaaacagac
tccgactcccagcaggccgacaagggtgagttgaaggatgaggctgagaagccgagcgag
tctgccgagaagagcgacaagacagaagcaacggaaaaggtgaaaaaagagggagtggag
gcatcagagcgtgaagaagagaatgaagagggaggggaggctaagaccgctcaagcagac
aaagacaaagaggagtctatggagacatcatcttcagaccaggagaaggagaaggaggag
aaaacccctacagaggagggagaggacaagagcaagaagctggaacatgatatcggcgaa
ggaaacattgccactgcggccgctgctgccttggcatctgctgccacaaaggccaagcat
ttggcagcagtggaggagaggaagatcaagtccttggtggctctgctggtcgagacccag
atgaagaaactggagatcaagttgaggcactttgaggaacttgagaccatcatggaccgt
gagaaagaggctttggagcttcagaggcagcagctgctaaccgagcgtcaggcgttccac
atggagcaactcaaatacgccgaaatgaaggcgaggcagcagatggagcagcaagcggca
gccgcggctgctgctgctgctgcagctgcccaggcccaaggacagggacagggacagggg
cctggggctggaccacactctgggccccctccaccaggcatgcacccaggaggacctaca
ccacatcacggaggacctcctccccaccacggagcacctccaccacaccatggagggccc
ccacccggcgctgcaatgcaccctggctaccccccaatgggtcaccacccaatggcccct
caccacccaggacagacaggaccaatgggaccaggtcagccaatgcctggacgtttgatg
tctggccctcctactgctgggcctcctcccggtggcatgcctcccatgatgcccccacgc
caccctggagcgcccaatggcatgtatcctggtccaccacctgcacagcctgatgcgatc
cctcctgctcctgtaggtcctccagcacctccgagtgggcgagtggctgacaactaa
DBGET
integrated database retrieval system
