Oreochromis aureus (blue tilapia): 116333951
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Entry
116333951 CDS
T07295
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116333951 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oau03021
]
116333951 (polr1a)
Enzymes [BR:
oau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116333951 (polr1a)
Transcription machinery [BR:
oau03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116333951 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
CDC45
Pox_C7_F8A
Com_YlbF
Nop14
Motif
Other DBs
NCBI-GeneID:
116333951
NCBI-ProteinID:
XP_031613104
Ensembl:
ENSOABG00000018777
LinkDB
All DBs
Position
LG2:complement(2163258..2189445)
Genome browser
AA seq
1685 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGIYSAEEIRKLSVKAITNFRFLDGVGNVAPNGLYDLALGPADT
KEVCSTCCQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAAMHLL
LNQLKLLDHGAMQEVYQIEQVLGQYMEENVKATVDEVVQVLQEFTDATVGMNGASSEDTK
PIKHLVEKKGSLINDFWKIHMKTRKCPHCGCGRSTVRHEHNSKLIVTMPSGAQTSDKTED
DLLRGKRVYMTASTAREHVNKVWEKEGFFLKCLFSGLEESMWSKEGGSSFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCDIIRKLLALIAGEKIIPETEALEQTDQ
SFLSGIQGATLTDKLYNVWVRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRKTILSPTCLAQREAVAKELLTPSPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTKDQYTELVYRGLTDKPGRVKLLPP
AIIKPQPLWTGKQVVSTLLLNVIPEKAVPLNLAGKSKIPSKAWIQVPPRATPGYQPESMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGTNKRRKKIIKESLKIGTKALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQRDFITADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIRRSQGLDEVLARLDPQSATKHFAAIQRWKAKRELACPRSGAFLLFS
QKKLAKLKQTDEVEADCGRNPAVQQLVQQWHTLDEASRSKYCRKSSRCPEPSLGLFRPDV
CFGSVSENFHGITEKYLQSRDTVSQDRLDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQSI
GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNNKRALKRVK
VLRKKLARVCLAEVLQKVDVIETLRIENHNKLRVFKITFHFLPPERYSDDRLLSPQQILH
YMETRFFRLLLEAIKKRSAKLASIAVETRRATARDRDDDGDGAAASGGLDDGEEEQEREI
VDDQENEGDTDASDAKRKGKQEEEVDYESEEEDDGDDPKDKEDQGVEEAEETAETKAVEE
PQANGRRTEKRKKGEKRVEGAESQMRVNSVLESNPAIERYSYDHKHELWCEVDLALPVSK
VHFDLTSVLTSLAQNAVIMETKGLTRCLLSETTTKTGEKETVLNTEGINMHEIFKYSDIL
DINRLYSNEVHAMAKTYGIEVALKVIEKEIKNVFAVYGIEVDPRHLSVVADYMCYEGVYK
PLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVRGGTGLFEL
KQPLQ
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcggaaaagaagtgccatggcggcgtttggaaggcatgtcgtttggcatttac
tcagccgaagagataaggaagttgagtgtgaaggccatcactaacttcaggttcctggat
ggtgttgggaatgtggccccaaacggcttgtatgatctggctttgggaccagcagacacc
aaagaggtgtgttcaacctgctgtcaggatttcaacaactgcccaggccaccttggacac
atagagttacctctacctgtgtacaatccattgttctttgataaactctacctgctgatc
cgtggctcgtgtctggcgtgtcacatgctaacatgtcctcgagctgccatgcacctgctg
ctgaaccagctcaagttattggaccacggagccatgcaggaggtctaccagatcgaacaa
gttctcggccagtacatggaggagaatgtcaaagcgactgtcgatgaggtcgtgcaggtg
ctgcaggagtttacagacgccacagttggaatgaacggcgcgagttcagaggacaccaaa
cctattaagcacttggttgagaagaaaggcagtttgataaacgacttctggaagatccat
atgaaaaccaggaagtgtcctcactgcggttgtggcaggtctacagtgcgtcatgaacac
aacagtaagctgattgtcacgatgccatcaggagctcaaaccagtgacaaaactgaagac
gatctgctgcgtggaaagagagtctacatgactgccagtactgctcgagagcacgtcaac
aaagtgtgggaaaaggaaggtttcttcctcaagtgtctgttctctgggctggaggagagc
atgtggtccaaagaagggggaagcagtttctaccctgacctcttcttcctggagctgctt
gtggtcccgccatgcaggtatcgtccaatcaatcgcctgggtgaccagatgtttactaac
ggtcagacagtgaacatgcaggctgtcatgaaggactgtgacatcataagaaaactcctg
gccctcatagctggcgagaaaattatcccagagacagaggctctcgagcagacggaccag
tcgtttctgtccgggatccagggagcgactctaacagataaactgtacaacgtgtgggtc
cgcctccagagccacgtcaacatcgtctttgacagcgacatggacaaactgatgacggag
aaataccctgggatcagacagatccttgagaagaaagacggattatttcggaaacacatg
atgggcaaacgagtggactacgccgcaagatctgtcatctgcccagacatgtacataggc
accaacgagataggaatacctatggttttcgccaccaagctgacctaccctcagccagtc
actccctggaatgtgaaggagctccggcaggccgttctcaacgggcccaacgttcacccc
ggtgcctccatggtgataaacgaggacggcaggaaaaccatcctctcccccacctgcctc
gcacagagggaggctgtggccaaggagctgctgacgccctctccgggtccacacaagatg
cccatgaagatcgtgaatcgacacataaagaacggagatgttttgttgctcaacagacag
ccgactctgcacagaccctccatccaagcccactgtgcacgcatcttaccaggagagaag
gtgctgaggctccattacgccaactgtaaagcttacaatgctgactttgatggggatgaa
atgaacgctcacttccctcaaagtgagctgggccgagccgaggcctacacattagtcagc
actgaccagcagtacctcgtccccaaggatggtaaacctttagcaggcctgatccaggac
cacatggtatcaggaacaaagatgacaatacgaggctgcttcttcaccaaagaccagtac
acagagctggtgtacagagggctgacagacaagccgggcagggtgaagttacttcctcca
gccataatcaaaccgcagccgctatggacgggaaaacaggtggtgtcgaccctcctgctg
aatgtgatcccagagaaagctgtgcctctcaacctggctggcaaatcaaaaattcctagt
aaggcgtggatccaggtcccgccacgagccactccagggtaccaacccgagagcatgtgt
gactctcaggtggtgattcgtcagggggagctgttagttggggttctggacaaagctcat
tatggctcctcggcttacggtttggtgcactgctgctatgagctctatggaggggaaacc
agcggcaaactgctcagctgtctggctcgactcttcactgcatacctgcagctctacaga
ggcttcacgctgggtgtggaggacatcctggtaaaaccaggcaccaacaagcggaggaag
aaaattattaaggagtcgctgaagattggaaccaaagcgctgcaggctgcttttaatctg
ccctccaatgtggaccaagccgaggctcagagtcgctggcaggatgctcacctgaaccca
gaccagagagacttcatcacggccgaccacaagttcaaagaagtggcaaaccaagtgaac
aatgatatcaacaaggtatgtatgccagtcggactgcacacctctttcccagacaacaac
ctccagctgatggtccaatcaggagccaaggggtctacagtgaacaccatgcagatttcc
tgtctgcttggtcagattgagttggagggccgtaggcctccactgatgccctctgggaaa
ttcttgccgtgcttccagccctatgaccccgcgcccggtgctgggggctttgtttctgga
agattcctcacaggcatcaaaccacaggagtttttcttccactgcatggctggcagagaa
ggactggtcgacacggccgtgaaaacatccagatcaggatatctgcagagatgtgtcata
aagcatctggagggtttggtagtgcagtatgacctgacggtaagagacagcgatggctct
gtggtccagttcctgtacggcgaggatggactagatatccccaaaactcagttcctgcaa
ccaagacagttccccttcatagaagacaactatgaggtcatcaggaggtctcagggcctg
gatgaggttttagcacgtttagaccctcagagtgccactaagcactttgctgccatccag
cgctggaaagcaaagagagagttagcatgtccacggagtggagcgtttttgcttttttcc
cagaagaagctggcaaaattaaaacagactgatgaagtagaggctgactgtggcagaaat
cctgctgtgcagcagcttgtacaacaatggcacactctggatgaagctagcagatccaaa
tactgcaggaagtcctcccgctgcccggagccgtcgctgggcctgtttaggcctgatgtc
tgctttggatcagtgtctgaaaactttcatggcatcacggagaagtacctgcagagcaga
gacactgtgagccaagacagactggacacacacagccttcgccagctgctgcattataag
tggcagcgctcgctgtgtgacccaggtgaagctgtgggtctgctggcagctcagtccata
ggcgagccctccacccagatgactctcaacaccttccactttgctggcagaggagagatg
aacgtcactttgggaatacctcgtctgagagagatcctgatggtggccagcgccaacatt
aaaacccccatgatgagcgttccagtgctcaacaacaagagagctttgaagagggtgaag
gtgcttcgtaagaaattggcccgggtgtgcctagctgaggtgctgcagaaggtggatgtg
attgagacgctgcgaattgaaaatcacaacaagctgcgggtgttcaaaatcaccttccat
ttcctgcctccagagcgctactctgatgataggctcttgtcaccccagcagatcctccac
tacatggaaacaaggttcttccgtctcctcctcgaagccataaagaagcgctctgccaag
ctggcctccatcgctgtggagaccaggagggccaccgccagagaccgggatgatgacggc
gatggagcagctgcctcaggagggttagatgatggagaggaagagcaggagcgagagatc
gttgacgaccaggagaatgaaggagatactgatgcttcggatgcgaagaggaaaggcaaa
caggaagaggaggtggactatgaaagcgaggaggaagacgatggcgatgaccccaaggat
aaagaggaccagggcgtggaagaggcggaggagactgccgagacaaaggctgtggaggag
cctcaggctaacgggaggagaaccgagaagcggaagaagggagaaaaacgagtggaagga
gcagagtcgcagatgagagtgaactctgtgctggagtcaaacccagccatagagagatac
agctatgaccacaagcatgaactctggtgtgaggttgacctggcattacctgtgagcaag
gtgcactttgatctgacctcggtgctgacgtcgctggcccagaacgccgtcatcatggag
accaagggcctgacgcgctgcctgctcagcgaaacgacaacaaagaccggagaaaaggaa
acggttctcaacactgagggaatcaacatgcatgaaatcttcaagtacagtgatatattg
gacatcaacagactgtactccaatgaggtgcacgccatggcgaagacatatgggattgag
gtggctctgaaggtcatagagaaagagatcaaaaatgtctttgctgtctatggtattgaa
gttgaccccagacatctatcagtggtagcagactacatgtgctatgaaggtgtatataag
ccactgaaccggcatgcaatccggtccaactcctctcctctgcagcagatgaccttcgag
accagctacaaattcctcaagcaggctaccatgctaggatcacatgatcagctggtgtca
ccctcagcctgcctggtggtggggaaagtagtcagaggtggaacaggactctttgaactg
aagcagcctctgcagtag
DBGET
integrated database retrieval system
