Oreochromis aureus (blue tilapia): 116334321
Help
Entry
116334321 CDS
T07295
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04382
Cornified envelope formation
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04518
Integrin signaling
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116334321 (col4a5)
04518 Integrin signaling
116334321 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116334321 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116334321 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116334321 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oau04147
]
116334321 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116334321 (col4a5)
Exosome [BR:
oau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116334321 (col4a5)
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116334321 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116334321
NCBI-ProteinID:
XP_039466071
UniProt:
A0AAZ1XC16
LinkDB
All DBs
Position
LG3
Genome browser
AA seq
1687 aa
AA seq
DB search
MSKDSKCLRQLGATLFFLVLCAVVQRSDSAACHGCAGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPQGPGGPKGIRGPPGTPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGDRGFPGSPGIPGQQGFPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGL
PGGPGRPGPPGIQGPVGPPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGAPGLQGPP
GPPGQVGEQTKPAETEIQRGDKGDQGPPGPKGDPGLPGPPGPYGGQKGEKGEPGEPGKRG
KPGKDGDPGSPGYPGPTGETGQPGVPGRDGETGQKGDRGFPGPPGEVIGGPIGNQVGPKG
EPGLPGTPGLKGDRGVQGFTGPPGEPGLPGTGSGGFPGPQGFPGERGQKGETGPPGIFLP
GPPGRAGSPGPPGPPGPSGLPGTSSGQTCIPGLPGVPGAQGERGFPGEIGQKGEKGETCV
NCVGSVNPIPGPQGPPGPPGFPGPPGTQGFKGDRGFPGTPGSIGPSGPPGPQGPPGLNGE
KGDPGDPIRVNGLRGEKGDTGFPGPPGLPGLEGTPGRDGAPGPPGPKGAPGSLLVKGERG
LPGEPGFPGNPGDRGPPGLPGFGNPGPRGEKGIQGVSGRPGSAGAPGTKGEPGQTTTEKG
AKGERGRDGEPGQPGSPGVPGQPGQPGFPGLPGAKGEPGIPGIGLPGPPGPKGFPGVAGQ
PGAPGGPGRPGIDGRPGEPGFPGPKGEPGVGRPGPPGLVGAPGPKGSTGPKGDPGFPGSP
GLSGRPGADGVPGFKGEPGTPGTPGPRGPPGTPSYGGTGPPGLPGPQGPMGPPGLPGSDG
PKGDPGPPGLDIPGPPGDPGAPGFQGPPGPIGTPGPPGGPGRDGLPGLPGQKGDMGPIGP
PGPSGGPGTPGGPGAPGFKGDPGFPGRDGAPGTPGTKGERGDMGLQGPPGPSVPSQLLKG
QKGDPGPSGGTGFPGPKGATGLPGDPGLPGTDGSPGRPGPPGPKGDPGRQGGPGIPGSPG
PKGQMGDMGIPGPPGQKGVPGVSGIPGSPGQPGSPGYQGPKGEPGSAGVGPPGLTGQKGD
PGLPGYPGNPGLKGNPGLPGPQGVTGRPGDKGDPGLPGFQGPPGIPGPKGVDGVPGTPGS
SGAPGRPGGPGPQGPSGLPGEKGQAGRDGIPGPAGVKGEPGIPGYGGPGPAGSPGLPGIK
GDTGPPGVPGSPGFPGPKGDPGSPGGPGENGAPGFPGPAGLSLPGPKGATGPPGLPGRAG
PAGPPGPPGPQGPRGPAGIGGVKGEKGTLGIPGIPGNPGQKGDPGFPGNPGTPGPTGPAG
IKGDSGQPGVPGFPGLKGDIGYPGPSGPPGDRGLPGERGTPGDPGEGSPPVVLKGERGPP
GLQGLRGSPGPPGLPGQPGGPGIKGDPGGPGSDGPPGFNGPPGRKGDIGPGGQPGQPGTP
GPRGSDGPQGPPGVPGSVSAAHGFLITRHSQTTDDPECPTGTKFIYNGYSLLYVQGNERA
HGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTDRRMPEDMAPFVGERIR
PYVSRCRVCEAPAMVIAIHSQTIQIPSCPENWEVLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSSPFIECHGRGTCNFYANSYSFWLATVEPSEMFSKPQSETYKAGSLRTRVSRC
AVCMKRT
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagactcaaagtgcctgcgacagctcggtgcgactctgttctttctcgtcctg
tgcgccgtggtacagcgatccgactctgcggcttgccatggatgtgcaggatccaaatgt
gactgcagtggagtaaaaggagagaagggtgaaaggggtttcccaggtttgacgggacag
ccaggcgtcccaggattccctggaccagaaggaccaattgggcccagaggagagaaggga
agtgatggacctcaaggaccaggcggtccaaaaggaataagagggcctccaggaacacca
ggatttccaggaacaccaggacttccagggctacctggacaggatggtcctccaggtccg
agaggagtgccgggttgcaatgggacaaagggtgacaggggtttcccaggaagtccagga
atccctgggcagcaaggatttccaggtccacctggtctgccaggacaaaagggagaccca
ggtgatgttatctccaccaatcgtttcggagagaaaggagcagtgggtttacccggtttg
ccaggaggtcctggccgacctggacctccaggtatacaaggtccggtaggtcccccagga
cccagaggctttgagggtcgtccaggtcctcctggtccacccgggcctaaggggaatatg
ggtttgaatttccaaggacccaaaggagaaaagggtgcaccaggtttgcaaggacctcct
ggtcctccaggacaggttggggagcagacgaagccggctgagactgaaattcagagagga
gacaagggcgaccaaggacctcctggccctaaaggtgatccgggtttaccgggacctcct
ggtccctatggtgggcagaaaggagaaaagggagaaccaggagagccgggcaaacgagga
aaaccaggcaaagatggtgatcctggttctccaggatacccagggcccactggagagaca
ggccagcctggtgttccagggagggatggtgagacaggacaaaaaggtgatcgtggattc
ccgggtccaccaggggaggtgattggcgggccaatagggaatcaggtggggcctaaaggt
gagcctggcttacctggaacacctggactcaaaggagacagaggagtacaaggtttcaca
ggacctccaggagaaccgggactcccaggaaccggtagtgggggttttcctggacctcaa
ggtttcccaggagagagaggtcagaagggagagacaggccctccaggaatctttctgcca
ggccccccaggtcgtgcagggtctcctggaccccctggtccgccagggcccagtggactt
ccaggcacttcctcaggtcaaacctgcataccaggacttcctggggttcctggtgcacaa
ggagaaagaggtttccctggagagataggacagaaaggtgagaaaggtgaaacctgtgtg
aactgcgtaggaagcgtcaatcccatccctggacctcaaggacctccaggaccgcctgga
tttcctggacctcctggcacccaaggtttcaagggagacagaggttttccaggaacacct
ggctctattggccccagcggtcctcctggtcctcaaggtcctcccggcctcaatggagag
aagggagatccaggtgatcccatcagagttaatggtttgaggggagagaagggtgacact
ggcttccctggaccacctggtctgcccggtctggaagggacgcctggtcgtgacggagcc
cctgggcctcctgggcctaaaggagctcctggctcgttgttggtgaaaggagaacgaggc
ctccccggtgagccaggtttccccggtaatccaggagacaggggtccccctggtcttcct
ggctttggaaatccaggacctcgtggagagaaaggtatccagggtgtctcaggaagaccg
ggatctgctggtgcaccaggaactaagggtgaacctggtcagacaacgacagagaaaggg
gccaaaggagaaagaggtcgggatggcgagcctgggcagcctggttcaccaggtgtacca
ggtcagcctggacagcctggttttcctggtttaccgggagcgaagggtgaacccggaatc
ccaggcattggactgccaggacctccaggaccaaaaggattcccaggtgttgccgggcag
ccaggagcccctggaggaccaggaagaccaggaatagatggacgtcccggtgagccggga
tttcctggaccaaagggtgaacctggtgttggacgtcctggtcctcctggtttagtagga
gcaccaggacctaaaggttccactggacctaagggagatcccggtttccctggtagccct
ggtttgtcaggacggcctggagctgatggagttccaggattcaaaggtgagcctggtaca
cctggtacacctggacctcgtggcccccctggaaccccctcttatggcggaacaggccca
ccgggtctcccaggacctcaaggcccgatgggaccaccagggctgccaggatcagatggc
ccaaaaggagaccctggccctccaggtctagacatcccaggcccaccaggagacccagga
gctccaggttttcaaggtcctccaggtccaattggaacgccaggaccacctggaggacct
ggccgcgatggtttgcctggcttgccaggtcagaaaggagacatgggtcccattggacct
ccaggaccttctggaggaccgggaaccccaggaggacccggtgctcctggatttaaaggt
gatccaggatttccaggtagagacggtgcaccaggtactcctggtactaaaggagagagg
ggagacatgggcctccagggaccgccaggacccagtgttccatcgcagctcttaaaggga
caaaaaggagatcctggaccttcaggtggaacaggttttccaggtccaaaaggtgctact
ggtctccctggtgaccctgggcttccaggaacagacggcagtcctggccgccctggacct
ccaggtcctaaaggagatcctggtcgccaaggaggtccaggtattcctgggtctccagga
cctaaaggccaaatgggagacatgggaatcccaggaccaccagggcagaaaggtgtacca
ggagtgtcgggtataccaggatccccaggacagccaggatcacctggttaccaaggaccc
aaaggtgagccaggttctgctggcgtcggaccgcctggactaaccggacaaaagggtgat
ccaggcctgccagggtacccaggaaatccaggactaaaaggaaacccaggattaccaggt
ccccaaggtgtgacaggaagaccaggcgacaaaggtgaccccggactcccaggattccaa
ggtcctcctggtatccccggtcctaagggtgttgacggtgtgcccggtaccccaggtagc
tcaggagctccaggtagaccaggagggcctggtccacaaggaccgtctggtctaccagga
gagaaaggtcaggcaggtcgcgatgggattccaggaccagctggagtcaaaggagaacca
ggaattccaggttacggtggtccgggtcctgctggaagtccaggactgccaggtatcaag
ggagacacaggtcctcctggtgtacccggcagccctggttttcctggccctaaaggagac
ccaggctcacctggtggccctggtgaaaacggtgcccctggctttcctgggcctgctggg
ctgtctctgccaggccctaaaggtgccacaggaccccctggattacctggaagagcaggc
cctgcaggtcctccaggtccacccggcccacaaggtcctcgtggacccgcaggaattggt
ggcgttaagggagaaaagggtactcttggcatacctggaattcctggcaaccccggacag
aagggagatcctggttttccgggaaatccgggcactcccggtcctactggacccgctggt
ataaagggagattccggacagcctggtgttcctggattccctggattgaagggtgatatt
ggatatcctggccccagtggccctcctggagatcgtggattacctggagaacggggcact
ccgggtgatcccggtgaaggttcgcctcccgttgtgctaaagggagaacggggaccccca
ggtcttcagggcctacgtggttctccaggaccacctggtttgcctggtcaacctggaggc
ccaggtatcaaaggtgaccctggtggtcctgggagcgatggtcctcctggcttcaacgga
cctcccggcaggaagggagacattggtccgggaggtcagcctggtcagcctggcacccct
ggtccccgtggttcagatggtccacaaggtcctcccggtgtcccaggatcagtttctgct
gctcacggtttcctcatcacccggcacagccagaccaccgatgacccagagtgccccact
ggaactaagtttatctataatggatactctctgttgtacgtgcaaggcaacgagcgggca
catggacaggaccttggcacagctggtagctgcctgcgcagatttagcaccatgcccttc
atgttctgcaatatcaacaacgtctgcaacttcgcatcccgtaacgactactcctactgg
ctgtccacggacagacgcatgcccgaagacatggcccccttcgtgggagagcgtatcagg
ccttatgtcagcagatgtagagtctgtgaagctcccgccatggtgattgcaattcacagt
cagactattcagattccttcttgccctgaaaactgggaagtactgtggattggatactcc
tttatgatgcacaccagtgcgggtgcagagggctccggtcaggctcttgcctcccccggc
tcctgcctggaggagttccgcagctcccctttcattgagtgccacggcagagggacatgt
aacttctatgctaactcctacagcttctggctagccaccgtggaaccttctgagatgttc
agcaagccccagtctgagacctacaaggcaggtagcctacggacacgtgtgagccgctgt
gcagtctgcatgaagcgcacgtaa
DBGET
integrated database retrieval system
