Oreochromis aureus (blue tilapia): 116334494
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Entry
116334494 CDS
T07295
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116334494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oau03041
]
116334494
03009 Ribosome biogenesis [BR:
oau03009
]
116334494
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116334494
Spliceosome [BR:
oau03041
]
Complex A
U2 snRNP components
U2 related factors
116334494
Complex B
116334494
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116334494
Ribosome biogenesis [BR:
oau03009
]
Eukaryotic type
90S particles
Helicases
116334494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
Flavi_DEAD
SRP54
nSTAND3
Atrophin-1
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
116334494
NCBI-ProteinID:
XP_031613785
Ensembl:
ENSOABG00000002725
LinkDB
All DBs
Position
LG6:complement(20035787..20045857)
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDREPKPSSAP
SNSTPAAPGLPPLKQMVLNQQINPFTSLPHTPRYYEILKKRLQLPVWEYKESFTDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgtttggatttgggtgatgactactcctccagtaagaagaggtct
gacggacgagaccgggaccgtgacagagaccgcgaagaccgttcgagggacagggaccga
gacagagaccgtgatcgggacagagaccgggacagagaaccaaagccatctagtgcccca
tctaacagcacacccgctgctccaggcttaccaccgctcaagcaaatggtcctaaaccag
cagatcaacccattcaccagcctgccccatactccccgctactatgagatcctgaagaag
aggctacagcttccagtgtgggagtacaaggaaagcttcactgacatcatcacacgtcat
caaagctttgtgcttgttggagagactggctccggcaagacaacacagatcccacagtgg
tgtgtggatatggttagaggcttgcctggtcctaagcgggctgtagcctgtactcagccc
aggagagtagcagccatgagtgtggctcagagggtggcggacgaaatggacgtcatgctt
ggacaggaagttggctactccatccgatttgaggattgtagctccgccaagactatatta
aagtacatgacagacggtatgttgttaagagaggccatgaatgacccactactggagcga
tatggtgtgatcattctggatgaggctcacgagagaactctggccacagacatcctgatg
ggagtactgaaagaagtggttcgtcagagatcagatctgaaggtgattgtcatgagtgcc
acactagatgctgggaagttccaggtgtactttgacagctgtcctcttctgactattcct
ggacgtacacatcctgttgagatcttttacactccggagccagagcgggactaccttgag
gcggcaatccgcactgtcatccagattcatatgtgtgaggaagatgaaggtgactgtctt
ctcttcctcactggtcaagaggaaattgatgaggcatgcaaacggatcaagcgtgaggta
gatgacctgggtcctgaggttggagacatcaaaatcattccactgtattccacgttgcct
ccacagcagcaacaaagaatctttgagccgcctcctccaaggaagccaaatggtgcaata
ggaagaaaggttgtggtgtcgacaaacatcgctgagacttctctaacaattgatggcgtg
gtgtttgtcattgaccctggatttgccaaacaaaaggtgtacaatcctcgaatcagagtg
gagtctctgctcgtcacagccatcagtaaagcttctgcccagcagagggcaggacgagct
ggaagaacacgtccagggaaatgcttccgtctctacacagagaaggcctacaaaacagag
atgcaggataacacataccctgagattcttcgctcaaacttgggatctgtagtgcttcag
cttaaaaagctgggtattgatgacctcgtccactttgacttcatggatccacctgctcct
gagacgttgatgagggcccttgagctgctgaactacctggcagctctcaatgatgatggt
gacctgacagagctgggctccatgatggcagaatttcctctggacccccaactggcaaag
atggtcattgcaagctgcgagtttaactgctccaacgagatcctttccattactgccatg
ttgtcagtcccacagtgttttgtccgtcctacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacattgacggagaccacttgacgctgctcaacgtctatcacgcc
ttcaaacaaaaccatgagtctaaccagtggtgctacgacaactttgtcaactaccgctcg
ctgatgtctgccgacaatgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
cctcgtcggagcacagagttcacaagcagagattactacatcaacatccgacgggcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaagtggtccagctgcacccatctacagtcctggaccacaaaccagagtgg
gtgctctacaacgagtttgtcctcaccaccaagaactacatccgcacatgcacagacatc
aagccagagtggctggtgaagattgcacctcaatactacgaaatgagtaacttcccacaa
tgtgaagctaagcgacagctggagcgaatcattgccaaactagagagcaaagagtattcc
cagtactga
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