Oreochromis aureus (blue tilapia): 116336325
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Entry
116336325 CDS
T07295
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116336325 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116336325 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116336325 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116336325 (col1a1b)
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116336325 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
116336325
NCBI-ProteinID:
XP_031616039
Ensembl:
ENSOABG00000002023
LinkDB
All DBs
Position
LG8:7791104..7809520
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AA seq
1444 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDGQEYTESTPVGPTGPKGDPGLPGYPGANGI
PGDPGPPGPPGPPGPPGLGGNFSPQYSDPSKSSGPPVPGPIGPMGPRGPPGPSGPPGPQG
FTGPPGEPGEPGASGPLGSRGPSGPPGKNGDDGEAGKPGRPGERGPAGPQGGRGFPGTPG
LPGIKGHRGFSGLDGAKGDSGPAGPKGEPGTSGENGIPGALGARGLPGERGRPGAPGPAG
ARGNDGNTGPAGPPGPTGPAGPPGFPGGAGAKGETGAPGGRGSEGPQGARGEPGNPGPAG
PAGPAGAPGSDGSPGSKGAPGAAGIAGAPGFPGARGPAGAQGAVGAPGPKGNNGDPGPSG
PKGEPGAKGEPGPAGIQGLPGPSGEEGKRGGRGEPGGAGPRGPPGERGAPGARGFPGADG
GAGGKGAPGERGAPGSLGAQGVTGESGSPGAPGAPGLKGVTGSPGSPGPDGKAGPAGAPG
QDGRPGPPGPGGSRGQPGIMGFPGPKGASGDSGKPGERGATGPAGAVGAPGKDGDVGAPG
PSGPAGPAGEKGEQGPAGSPGFQGLPGPQGSTGETGKPGEQGAPGEAGPSGPAGPRGDRG
FPGERGGPGIAGPTGPRGAPGPAGNDGPKGEPGAAGAPGGLGAPGMQGMPGERGAAGLPG
ARGDNGEPGGKGVDGAPGKDGPRGLTGPIGVPGPPGAQGEKGEAGAVGVAGPSGPRGSPG
DRGEPGPAGAAGFAGPPGVDGQPGAKGESGDSGPKGDAGPPGPTGPAGASGPQGPAGAPG
PKGARGSVGSPGATGFPGPAGRVGPPGPAGAGGAPGPGGPTGKDGARGARGETGPAGRPG
EAGAAGPPGPSGEKGSAGSDGAPGAPGIPGPQGIAGQRGIVGLPGQRGERGFPGLPGPSG
EPGKQGSSGPVGERGAPGPAGPPGLSGPTGEAGREGSPGHDGAPGRDGPSGPKGDRGETG
LAGPPGPPGAPGAPGGVGPSGKTGDRGESGPSGPAGPAGPAGVRGPAGPAGAKGDRGEAG
EAGERGHKGHRGFTGASGLPGPAGPPGERGPAGASGPAGPRGPSGSNGAPGKDGVNGIPG
PIGPPGPRGRNGEMGPAGPPGPPGPAGPPGPPGSGFEFVSQPLQEKAPDPLRGGHYRADD
PNVMRDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHSEWKSGMYWIDPNQ
GSPLDAVKVHCNMETGETCVYPSESTIPMKNWYLSKNIREKKHVWFSESMTGGFQFQYGS
DGADPEDVNIQMTFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKALLLQGSNDVEIRA
EGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVQVGP
VCFL
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgatagaacatttggcagctgcacattagatggacagttgtac
aacgacaaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgccgatcccattattcca
gacggagagtgctgccctatctgccctgatggtcaagaatatactgagtcaactcccgta
ggacccactggccccaagggagacccgggtcttcctggctatcccggcgctaatggaatc
cctggcgatcctggcccacctggaccccctggcccccctggcccccctggccttggcgga
aacttctctcctcaatattctgacccctcaaaatctagtggcccacctgttcctggccca
ataggtcctatgggtccccgtggtcctcctggaccttccggccctcctggtcctcagggt
ttcactggacctcctggagagcctggtgagcccggagcttctggtccactgggttctcgt
ggtccttctggtccccctggaaagaacggagatgatggtgaggctggcaaacctggacgc
cccggtgagcgcggacctgccggacctcagggtggtcgtggattccctggcacccctgga
cttccaggcatcaagggacacagaggcttcagtggtctagatggagccaagggagactct
ggacctgctggccctaagggagagcctggcacttctggtgagaatggtatccccggtgcc
ctgggtgctcgtggtcttcccggagagagaggccgccctggagctcccggccctgctggt
gctcgtggtaatgatggcaacaccggtcctgctggtcctcctggacctactggacctgct
ggcccccctggattccctggcggtgctggtgctaagggagagactggtgctccaggaggc
cgtggatctgagggaccccagggagcacgtggtgagcctggtaaccccggacctgctgga
cccgctggacctgctggtgctcctggatctgatggttcccctggttctaagggtgctcct
ggtgctgctggtattgctggtgctcctggcttccccggtgctcgtggtcctgctggagct
cagggagctgttggtgctcctggccctaagggtaacaatggtgaccctggtccctctggt
cctaagggagagcctggtgccaagggagagcctggccccgctggaattcagggacttcct
ggcccctctggtgaggagggaaagagaggaggtcgtggagagcctggtggtgctggaccc
cgtggaccccctggagagcgtggtgcccctggtgctcgtggtttccctggtgctgatgga
ggtgctggtggcaagggtgccccaggtgagcgtggtgcccctggctcattgggagctcag
ggagtcactggtgagtctggaagccctggtgctcctggtgcccctggactgaagggtgtg
actggtagccctggaagccctggacctgatggcaaagctggacctgctggtgctcctgga
caagatggtcgccctggacctcctggccccggtggatccagaggacagcctggaattatg
ggattccccggacccaagggagcttctggtgattctggtaaacctggtgagagaggtgca
actggacctgctggcgctgttggtgctccaggcaaagacggtgatgttggtgctcctgga
ccttctggccccgctggacctgctggagagaaaggagagcagggacccgctggatctcct
ggattccagggacttcctggaccccaaggttctactggtgagactggcaagcctggtgag
cagggtgctcctggtgaggcaggaccttctggcccagctggaccaagaggtgacagagga
ttccctggtgagcgtggtggacctggcattgctggcccaaccggaccccgtggtgctcct
ggacctgctggtaacgatggacctaagggagagcctggtgctgccggtgcccccggtggt
ttgggagcccccggtatgcagggaatgcctggtgagcgtggagccgctggtctccctggt
gccagaggagataatggtgagcctggtggcaagggagttgatggtgcccctggcaaagat
ggcccacgtggtctgaccggtcctattggagtccccggacctcctggtgctcagggtgag
aagggtgaggctggtgctgttggagttgctggacctagtggtcctcgtggttcccctggt
gaccgtggtgagcctggacctgctggagctgccggatttgctggacctcctggtgttgat
ggtcagcctggtgctaagggagagagtggtgacagtggacccaagggagacgctggtcct
cctggacctaccggacctgctggagcttctggtcctcagggacctgctggagctcctgga
cccaaaggtgctcgtggtagtgttggttcccctggtgctactggtttccctggacctgct
ggaagagttggaccccctggccctgctggagctggtggagcccctggacccggaggacct
actggcaaagatggagcaaggggagctcgtggtgagactggccctgctggccgccctggt
gaggctggtgctgctggacccccaggacctagtggagagaaaggatctgctggctctgat
ggagcccctggtgctcctggtatccctggaccccaaggtattgctggacagcgtggtatt
gtaggtctccctggacagcgtggagagcgtggtttccctggtctgcctggaccatctggt
gagcctggaaagcagggatcatctggacctgtcggtgagcgcggagcccctggacctgct
ggaccccctggactgtctggtccaactggagaggctggtcgtgagggatctcctggtcat
gatggtgcacctggtcgtgatggtccttccggccctaagggagaccgtggtgagactggc
ttggctggtccccctggacctcctggtgctcctggagctcctggaggagttggcccctcc
ggcaaaactggtgaccgtggagagagtggtccctctggtcctgctggtcccgctggccct
gctggtgttcgtggtcctgctggtccagctggtgctaagggagacagaggagaggctggt
gaagctggagagagaggccacaagggacacagaggattcactggtgcatctggcctgccc
ggacctgctggaccccctggagagagaggccctgctggtgcttctggacccgctggacct
agaggaccttctggatcaaacggcgcccctggtaaggatggtgtgaacggtattcctgga
cccattggacctcctggacctcgtggtcgcaatggagagatgggacctgctggacctcct
ggacctcccggacccgctggacctcctggacctcccggcagtggatttgagttcgtcagc
cagcctcttcaggagaaggcccctgatcccctgcgtggtggccactaccgcgctgatgat
cctaatgtcatgcgcgatcgtgacatggaggttgacaccacccttaagaccctgacacag
aaggtcgagaagatccgcagcccagacggtacccagaagagcccagcccgcatgtgccgt
gatctgaggatgtgccactctgagtggaagagcggcatgtactggattgatcccaaccag
ggctctcctctggatgccgtcaaggtccactgcaacatggagactggtgagacttgtgtc
taccccagcgagtccaccatccccatgaagaactggtacctcagcaagaacatcagagag
aagaagcacgtctggttcagcgagtccatgaccggtggattccagttccagtatggcagc
gatggagctgatcccgaggatgtcaacatccagatgactttcatgcgcctgatgtccaac
caggcctctcagaacgttacataccactgcaagaacagcatcgcctacatggattccgcc
accggcaacctgaagaaggctctgcttctccagggatccaacgacgtcgagatcagagcg
gagggcaacagccgcttcacatacagtgtcagcgaggatggctgcacgtcacacactggc
acatggggcaagacagtcattgactacaagacatcaaaaacttcccgcctgcccatcatt
gacattgctcctatggatgttggtgcacctgatcaggaatttggcgtccaagttggccct
gtttgcttcttgtaa
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