Oceanicaulis alexandrii: ABWI01_00360
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Entry
ABWI01_00360 CDS
T10771
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI01_00360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oax03019
]
ABWI01_00360
03009 Ribosome biogenesis [BR:
oax03009
]
ABWI01_00360
Enzymes [BR:
oax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABWI01_00360
Messenger RNA biogenesis [BR:
oax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWI01_00360
Ribosome biogenesis [BR:
oax03009
]
Prokaryotic type
rRNA processing factors
ABWI01_00360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
XHC17665
LinkDB
All DBs
Position
complement(56444..59170)
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AA seq
908 aa
AA seq
DB search
MSRKMLIDAAHPEETRVVIVDNNRVEEFDFESASRKPIRGNIYLAKVTRVEPSLQAAFVE
YGGNKHGFLAFNEIHPDYYQIPHADREALREAEAEATGDLNDDAGPDDDNEDAPTPDEDD
LLDEAARRRRSFMRRYKIQEVIKRRQVLLVQVAKEERGNKGAALTTYLSLAGRYCVLMPN
TARGGGISRKITNAPDRKRLKSAVSELAVPQGMGLIIRTAGAARTKVEIKRDYDYLIRLW
ETIRTTTLESSAPKLIYEEGNLVKRVIRDLYDKEIDEVLVEGEDAYKEAKAFMRMLMPSH
AKKVQHYRDATPLFLRHQVESQLEAIHSPVAQLKSGGYIVINPTEALVSIDVNSGKATKE
RNIEQTALKTNMEAAEEAARQMRLRDLAGLLVIDFIDMDENKNVRAVEKKMKDSLKRDRA
RLQVGRISQFGLMEMSRQRRRTSLVEGSSNVCPHCQGSGHMRSIESSALVALRSLEEEGV
RGRTSKARLVCAPEVALYILNEKRDHLTAIEARYDMSVTVDADDSLIRPDCTLERLESRS
EAARAEAKAARADTPLTSAAAVVADIDEDDDIEDTEEAEATEEREDRGERPARTASDETN
EDGSKKRRRRGRRGGRNRRKRNDEAGSSDDALAALDGTEETDGETGTESVSKDADASDGV
AGLQVIEPSESEPIGAQTDDDDTPPRRKRPSRRRRKPAGQSEAAQDEAGQSETSAQDAPA
SEAQAEDAPAEADSDAGDETAPAKPKRSRRTRKKPADDVADTSEAQASDADAPAASDGDA
AEDKPKRRTRRKKAEPVSEASAEGDAPSDEAAQADADKPKRRTRRKKAEPAAQADTTDTA
AREAMEQASSPAPEPQAASESDAKPEQSEPAEAAPPAADQASDDEGSDENRPAKRGWWQR
SSKFLGLS
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcaaaatgctgatcgacgccgcccacccggaagagacccgggtggtgattgtc
gacaacaatcgggttgaggaattcgattttgaatcggcctccagaaagccgattcgtgga
aacatctatctcgccaaagtcacgcgtgtagagccctcgctacaggccgcattcgtcgaa
tatggcggtaacaagcacggctttctcgccttcaacgagattcatccagattactatcag
atccctcatgcggatcgtgaagcgctgcgcgaagcggaagcggaagcgaccggcgatctg
aatgacgacgccggccctgacgacgacaatgaagacgcgccgacgcctgatgaagacgat
ctgcttgacgaggcggcgcgccgtcgccgctccttcatgcgccgctacaagatccaggaa
gtgatcaagcgccgtcaggtgctgctggtgcaagtggccaaggaagagcgcggcaataag
ggcgcggcgctgacgacctatctgtcgctggccggccggtattgcgtgctgatgcccaac
accgcgcgcggcggcggcatttcacgcaagatcaccaacgcccctgatcgcaaacgtctg
aaatcggcggtgtccgaactggccgtgccccaaggcatgggcctgatcatccgcacagct
ggggctgcgcgcaccaaggtcgagatcaaacgcgattacgattacctgatccggctgtgg
gagacgatccgcaccacgacgctggaatcgagcgcccccaagctgatttatgaagaaggc
aatctcgtcaaacgagtgatccgcgatctctacgacaaggagatcgacgaggtgctggtg
gaaggcgaggacgcatataaggaggccaaggccttcatgcgcatgctgatgcccagccac
gccaagaaggttcagcattatcgcgacgccacgccgcttttcctgcgtcatcaggtggaa
agccagctcgaggcgatccattcgcctgtcgcgcagctgaaatcaggcggctatatcgtt
atcaacccgaccgaggcgctggtttccatcgacgtcaactcgggcaaggcgaccaaggaa
cgcaatatcgagcaaaccgcgctcaagaccaatatggaggcggccgaggaagccgctcgc
cagatgcgtctacgcgacctcgccggcctgctcgtgatcgacttcatcgacatggacgag
aacaaaaacgttcgcgcggtcgagaagaagatgaaggattcgctcaagcgtgaccgcgcc
cgcctgcaagtgggccgtatctcgcaattcggcctgatggagatgagccgtcagcgccga
cgcacctcgctggtcgaaggatcgagcaatgtctgcccgcattgtcagggctcgggccat
atgcgctcgatcgaatccagcgctctggtcgccctgcgctcgctggaagaggaaggcgtg
cgcggccgcacgtccaaagcgcgcctggtttgcgcgccggaagtggcgctctatattctc
aacgagaaacgcgatcatctcaccgcgattgaagcgcgctatgacatgagcgtgacggtg
gacgcggatgacagcctgatccgccctgactgtactcttgaacgtcttgagagccgcagc
gaagcagcgcgcgccgaagcgaaagccgcccgcgccgacaccccgctgaccagcgcggcc
gccgtcgtcgccgatatcgatgaagacgacgacatcgaggatacggaagaagccgaggcg
actgaagagcgtgaggaccgcggtgaacgcccggcgcgcaccgcgtctgacgagaccaat
gaagacggctcgaaaaaacgccgccggcgcggccgccgcggtggtcgcaatcgtcgcaag
cgcaatgatgaggccggatcctcggacgacgccctggcggctctggacgggaccgaggag
actgacggcgaaaccggaaccgagtctgtgtccaaggacgctgacgcatccgatggtgtc
gcgggccttcaagtgatcgagccgtctgaatctgaacccattggtgctcagaccgacgat
gatgacacgccgccccggcgcaaacgccccagccgtcgccgtcgcaaaccggccggccag
agcgaggccgctcaggatgaagcgggccagagcgagacgagcgctcaggacgcgcccgcg
tctgaagcgcaggccgaggatgcgccggcggaggccgacagcgacgcaggcgacgagacg
gcgccggccaagcccaagcgcagccgccgcacgcgtaaaaaacctgccgatgacgtagcg
gacacttcggaggctcaagcgtctgacgcagacgcccctgcagcttctgacggggatgcg
gcggaagacaagcccaagcgtcgtacgcgccgcaagaaggccgaacccgtttctgaagcg
tccgccgaaggcgacgcgcccagcgatgaggccgctcaggcggacgccgacaaacccaag
cgacgcacccgccgcaagaaagcggaaccggcagctcaagcggacaccaccgatacggcg
gcccgcgaagccatggagcaggccagttctcctgcgcctgagcctcaagccgccagcgag
agcgacgccaagcccgaacagagcgagcccgctgaagcggccccgccagcggctgatcag
gccagcgatgacgaaggatcagacgagaaccgccccgcgaaacgcggctggtggcagcgt
tcgtcgaaattcctcggcctgagctaa
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