Oceanicaulis alexandrii: ABWI01_00840
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Entry
ABWI01_00840 CDS
T10771
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI01_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oax03019
]
ABWI01_00840
Messenger RNA biogenesis [BR:
oax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWI01_00840
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
XHC20361
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Position
158568..160178
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AA seq
536 aa
AA seq
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MNLNLYGYGPEEDRKWIILDCGVTFGDLTTPGVDIITPDPRFIAERKHQLLGIVLTHAHE
DHMGAVAHLWRQLECPIYATPFTAWLMRDRLAEHGLLDQVALHEIDLHTRFELGPFDMQL
VTLTHSIPEPNGVIIRTPVGTVLHTGDWKIDPEPLIGASTDVAALEAAGEEGVMAMVCDS
TNVFTEGESGSESDVRDNLIELVGKQTGRVAIAAFASNVARLETAIRAGEANGRRVCLVG
RSMHRMTQAAKAVGLLADCQPFIEEEEIGYFPPDKILLLCTGSQGEPRAALSRIAEGSHR
NVTLNKGDSVIFSSRIIPGNERGIFDLMNRLAERGVDIITERDEHIHVSGHPCRDELRQM
YAWAKPTTAIPVHGEYRHLVEHAQLARDLQVPNAVVPRNGSIIRITQEGASIVDEAPAGR
LHVDGNFLTEADAESIKERRRLAYNGHLTVAAVLADGELVSEIDVRAMGVASTHAYDLDD
FLDDLAEAADTAFKRLDRRARKDPGAVEEAIRRGVRREASRIWGKKPHVEALILTV
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgaacctttatgggtatggtcctgaagaagatcgcaaatggatcatcctcgat
tgcggggtgacgtttggtgatctgacgacgcctggcgttgacatcatcacccccgatccg
cgcttcatcgccgagcgcaagcatcagcttctgggcatcgtgctgacccacgcccatgaa
gaccatatgggcgcggtggcgcatttgtggcggcagctggaatgtccgatctacgcgacg
ccgttcacggcctggctgatgcgcgatcgtctggccgagcatggcctgctcgatcaggtg
gcgctgcacgagatcgacctgcacacccggtttgaactgggcccgttcgacatgcagctg
gtgacgctcactcactccattcccgaacccaatggcgtgatcatccgcacgccggtcggc
accgtgctgcacaccggcgactggaagatcgaccctgaaccgctgatcggcgcttcgacg
gacgtcgccgcactggaagcggcgggcgaagagggcgtgatggcgatggtgtgtgacagc
accaatgtcttcaccgaaggggagtccggctctgaaagcgatgtgcgcgacaatctgatc
gagctcgtcggcaagcagacgggccgtgtggctatcgccgccttcgcctccaatgtggcg
cgtcttgaaaccgcgatccgcgccggcgaagccaatggccgccgcgtctgtctggtgggc
cggtccatgcaccgcatgacccaggccgcgaaagcggtgggtcttctggccgattgccag
cccttcatcgaggaagaggaaatcggctatttcccgcccgataaaatcctgctcctatgt
accggctctcagggcgaaccgcgcgccgcgctgtcgcgcattgctgagggatcacatcgc
aatgtcacgctaaacaaaggtgacagcgtgattttctcctcccggatcattcccggcaat
gaacgcggcatctttgatctgatgaaccgtctggccgagcgcggcgtggatatcatcacc
gagcgcgacgagcacatccacgtttctggccatccctgccgggatgaattgcgccagatg
tacgcctgggccaagcccaccaccgcgatcccggtgcatggcgaatatcgccatctggta
gaacacgctcagctggcgcgcgatcttcaggtgcccaacgccgtggtgccgcgcaatggc
tcgatcatccgtatcacccaagaaggcgcgtccatcgtggatgaagcgccggctggccga
ttgcatgtggatggcaatttcctgaccgaggcggatgcggaatccatcaaggagcgccgc
cgcctggcttataacggtcatctgaccgtcgccgctgttctggcggatggtgaattggtg
tcggagattgatgtgcgcgccatgggcgtggcctcaacccacgcctatgatctggacgac
ttcctggatgatctggcggaggcggcggacacggcgttcaagcgcctggatcgacgggct
cgcaaggatccgggcgcggttgaagaagcgatccgtcgcggcgtgcgccgggaagcgagc
cggatctggggcaagaaaccccatgtggaagcccttattctcacggtttga
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