Oceanicaulis alexandrii: ABWI01_01340
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Entry
ABWI01_01340 CDS
T10771
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABWI01_01340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oax03400
]
ABWI01_01340 (mfd)
Enzymes [BR:
oax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWI01_01340 (mfd)
DNA repair and recombination proteins [BR:
oax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABWI01_01340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_25
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XHC17849
LinkDB
All DBs
Position
complement(262698..266186)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNEFKALAESSQSLTVCGAPEGFDALIFCDALRARGGVGLYIATDEARASAFAAAARFFA
PDLEQLRLLGWDCQPYDRISPSPRTAARRAGALHALAQRDPKETKPLLVISTVSGALQRC
APKAALSGGGLSAKPGGVLDSEVLKQHLAENGYVRTATVTERGDYAVRGGVIDVFPADAE
EPVRLDFFGDVLESVRGFDPETQRTTSQLKSVSFAPVSEIVLNAEAISRFRSGFLKNFGA
VGSGDPIYDSVSAGARPNGAEHWLPLFHDHLDTVFDYVGEGALVGLDPLVKDALDERLEQ
IRDYYDARQAASKSGAGAMGAPAYRALEPTTLYLDEDAWAREIDGRAARRFTAFQEAGEA
VIDMGGKQGRSFAAERQADQNVFDAAAKHAVALRSSGKRVLFASWSEGGSDRLASVLGDH
GLKPIMAADDWRTAHKMSGQTISRIVLPLEHGFETPDFVVIAEQDVLGDRLARPRRKKKT
ADVIAEAGALTPGDLVVHADHGLGRYLGLKTLSVGEAPHDCLELEYAGASKLYLPVENIE
LLSRYGQDSETAQLDRLGAGAWQARKAKAKKRLRDMADQLIKIAATRNARDAEVLTPPSG
LYDEFAARFPYVETDDQLHAIDDVFSDFARGRPMDRLICGDVGFGKTEVALRAAFVAAMS
GRQVAIVAPTTLLARQHFKTFEERFKGWPVKVRQLSRLVPAKEATATRKELAEGTCEIVI
GTHAILAKTVKFADLGLLVIDEEQRFGVKHKERLKELKSDVHVLTLTATPIPRTLQLSMA
GIRDLSIIATPPVDRLAVRTYVTPFDSVTVREALLRERYRGGQSYYVAPRITDLDEISRF
LREQVPEVSFVVAHGQMSGSQLEDIMTAFYEGRYDVLVSTTIVESGIDIPTANTMIIHRA
DMFGLAPLYQLRGRVGRAKARAYAYLTTPANQKLTSTADKRLKVLQSLDSLGAGFTLASH
DLDLRGGGNLLGEEQSGHIKDVGVELYQSMLEEAVASLQGDTSLEERDWSPAINVGAAVL
IPEDYVPDLDVRMSLYRRLSSLDTKQEREGFAAELIDRFGKLPDEVESLLQVVALKALCK
RANVAKLDAGPKGAVATFREHGFGDPAALIELMTKRPADYKLRPDNTLVLKGDFPDPMDR
LKGALRLLAPVADAARRAKEAA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgagttcaaagcgcttgcagaatcttcccaatcgctgaccgtttgcggcgcgcct
gaaggctttgacgccctgatcttctgtgacgccttgcgggcgcgcggcggggtcgggctc
tatatcgccaccgacgaggcgcgggccagcgcgtttgcggctgcggcgcggttcttcgcg
ccggacctcgagcagttgcggctactgggctgggattgccaaccctatgatcggatcagc
cccagcccgcgcacggcggcgcgacgcgccggggcgctgcatgcgctggcgcaacgcgac
ccgaaagagacaaaaccgcttctggtgatttccaccgtgtcgggcgctcttcagcgctgc
gcgcccaaagcggcgctatcgggcgggggcctcagcgccaaacccggcggcgttctggat
tctgaagtgctcaaacagcatctggcggaaaacggctatgtgcgcaccgccaccgtcacc
gaacgcggcgattacgccgtgcgcggcggggtgatcgacgtgttcccggcggacgccgaa
gagccggtgcggcttgatttcttcggcgatgttctggaaagcgtgcgcggctttgaccct
gaaacccaacgcacgaccagtcagctcaaatcggtcagctttgcgcccgtcagcgaaatt
gtgctgaacgccgaggcgatttcgcgtttccgttctgggtttttgaagaatttcggcgcg
gtcggctccggcgatccgatctatgactccgtcagcgccggcgcgcgcccgaacggcgcc
gagcactggctgcctttgtttcatgatcatctcgatacggtctttgattatgtgggcgaa
ggcgctctggtggggctcgacccgctggtcaaggacgcgctcgatgagcgccttgagcaa
atccgcgactattatgatgcgcgccaggccgcgtcgaaatccggggccggagccatgggc
gcgcccgcctatcgcgcgctggagcccacaacgctctatctcgatgaagacgcatgggcg
cgtgaaattgacgggcgcgccgcccgccgcttcaccgcgtttcaggaagcgggcgaggcc
gtcatcgatatgggcggcaagcaagggcgcagcttcgccgctgaacgccaagccgaccag
aacgtctttgacgccgccgccaagcatgccgtcgcgctgcgttcatcaggcaaacgcgtg
ctgttcgccagctggtcggaaggcggttcggaccgtctcgccagcgtgctgggcgatcat
ggcctgaaaccgatcatggcggctgatgactggcgcaccgcccacaagatgagcgggcag
acgatctctcgcatcgtactgccgctggaacacgggtttgaaacgcccgatttcgtcgtc
atcgccgaacaggatgttctgggcgaccgtctggcgcggccacgccgcaagaagaaaacc
gccgatgtgatcgctgaagccggtgcgctgacgcccggtgatctggtggttcatgccgat
catggcctcgggcgctatctgggcctgaaaaccctgtcagtgggcgaggcgccgcacgat
tgtctggagcttgaatacgccggcgccagcaagctctacctgccggtcgagaatatcgaa
cttctgtcgcgctacggacaggacagcgaaactgcgcagcttgaccgtctgggggcgggc
gcctggcaggcgcgcaaggccaaggccaagaaacgcctgcgcgacatggccgatcagctg
atcaagatcgccgccacccgcaatgcgcgcgacgccgaagtgctgaccccgcccagcggg
ctctatgacgagttcgcggcgcgcttcccctatgtggagaccgacgaccagcttcacgcc
atcgacgatgtcttctctgatttcgcccggggccgccccatggaccgcctgatctgcggc
gatgtgggctttggcaaaaccgaagtggcgttgcgcgcggcgttcgtggccgcaatgagc
ggacgtcaggtcgccatcgtcgcgccgacgaccttgctcgcgcgccagcacttcaagact
ttcgaggaacgcttcaaagggtggccggtgaaagtgcgccagctctcccggctcgtacct
gcaaaagaagcgaccgctacgcgcaaggagctggcggagggcacgtgcgagatcgtgatc
ggcacccatgccatcctggcgaaaaccgtgaagttcgccgatctgggccttctggtgatc
gatgaagagcaacgctttggcgtcaagcacaaggaacggctcaaggaactgaaatcagac
gtccacgttctgacgctgactgcgacgcccatcccgcgcaccctgcagctgtccatggcg
ggcattcgtgatctgtccatcatcgccacaccgcccgtggaccgtctggcggtgcgcacc
tatgtgacgccgtttgacagcgtgacggtgcgtgaggccctgctgcgtgaacgctatcgc
ggtgggcagagctattatgtggccccgcgcatcacagatctcgatgaaatctcgcgtttc
ctgcgcgaacaggtccccgaagtcagtttcgttgtcgcgcatggccagatgtccggcagt
cagctcgaagacatcatgacggcgttctatgagggccggtacgatgtgctggtctcaacc
accatcgtggaatccggaatcgacatccccaccgccaacaccatgatcatccaccgcgcc
gacatgttcggcctggcgccgctctatcagctgcgcggccgggtcggacgcgccaaggcg
cgcgcttacgcttacctcacgactcccgccaaccagaaactcacctccaccgccgacaag
cgcctgaaggtgctgcaatcgcttgatagtttgggcgcgggcttcaccctggcgagccat
gatctggatctgcgcggcggcggcaatctgctgggcgaagagcaatcaggacatatcaag
gatgtgggcgtggagctctatcaatccatgctcgaagaagccgtggcgagcctgcaaggc
gatacaagcctggaagaacgcgactggtcgcccgccatcaatgtgggcgcggcggtgctg
atccctgaggattatgtgccggatctcgacgtgcgcatgtcgctctatcgccgcttgtcg
tcgctcgacaccaagcaagagcgcgagggcttcgccgccgaactgatcgaccggttcggc
aaattgcctgatgaagttgagagcttgcttcaggttgttgcccttaaagccctgtgtaaa
agggcgaatgtggccaagctcgatgctggtcccaaaggcgcggtcgcgaccttccgagag
catggcttcggcgatccggcggctctgatcgagctcatgaccaagcgcccggccgactac
aagctgcgaccggacaacacgctggtgctcaagggcgatttccctgatccgatggaccgg
ctgaaaggtgcgctacggcttctggcgccggtggccgacgccgcccggcgggcgaaagag
gcggcctag
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