Oceanicaulis alexandrii: ABWI01_03260
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Entry
ABWI01_03260 CDS
T10771
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI01_03260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oax03019
]
ABWI01_03260
Enzymes [BR:
oax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWI01_03260
Messenger RNA biogenesis [BR:
oax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWI01_03260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XHC18215
LinkDB
All DBs
Position
complement(650205..651554)
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AA seq
449 aa
AA seq
DB search
MTRFTDLGLNDSILSAIAEQGYETPTPIQARAIPQVLAGRDLIGLAQTGTGKTAAFVLPL
IHQLLADNKQAPGRSCRALILAPTRELAAQIEEQVRAYTAHTKLTSAVIFGGVKAGPQIR
VLARGVDILVATPGRLLDHLGERKARLDLTSFVVLDEADQMLDLGFIPAIRKLLRLVGKE
RQTLMFSATMVPAIRQLADDFLSNPETVAVTPPSKPVERIDQKVLYTEAADKPEALIDLM
VPEAGKRAIIFTRTKHGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGESPVLV
ATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGATGRAVALCAPDERVMLKDI
EKTMGVAIAGLNDAPPMPKGEAAKSKSRRRGGRRGQGQGQGEGASSGQKRGGASGKPRQG
GDGARSGKPQRNRRGSGGQRRGPSATAAE
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
ttgacccgatttacagatcttggtctgaacgactccattctctcggcgatcgccgaacag
ggctatgaaacgcccacccccatccaggcgcgcgccattccccaggtgctcgccggccgc
gacctgatcggcctggcgcaaacgggcaccggtaaaaccgccgccttcgtgctgccgctg
atccatcaattgctggcggacaacaaacaggcgccgggccggtcctgtcgcgccctgatc
ctggcgccgacgcgtgaactggctgcacaaatcgaagagcaagtccgcgcctataccgcg
cacaccaagctgacgagcgccgtgatctttggcggcgtcaaagcgggcccgcaaatcagg
gtgctggcgcgcggcgtcgatattctggtggcgacgccgggccgtttgctcgaccatctg
ggcgagcgcaaggcgcgtctggacctgaccagtttcgtggtgctggacgaggcggatcag
atgctggatctcggcttcatccccgcaatccgcaaactgctgcgcctggtcggaaaagag
cgtcagacactgatgttctccgccaccatggtgccggccatccgtcagctggcggatgat
ttcctgtccaatccggaaaccgtggcggtgaccccgccgtcaaaaccggtggagcggatc
gaccagaaagtgctttacaccgaagctgcggataagcccgaagcgttgatcgatttgatg
gttcctgaagcgggcaagcgcgcgatcatcttcacccgcaccaagcatggcgcggaccgg
gtggcgaagcgcctggtgaaatacggccacaaggccaacgccattcacggcgataagagc
cagaaccagcgcacgcgtgcgctcgacgcgttcaaatcgggcgaatccccggtgctggtc
gcgaccgatatcgcggcgcgcggcattgatgtggacggcgttgatctggtggtcaattac
gagctgcctaatgtggccgagaactatgtccaccgcatcggccgcaccgcgcgcgccggc
gcgaccggtcgggctgtcgccttgtgcgcgccggacgagcgcgtgatgctcaaagatatc
gagaagaccatgggcgtcgccatcgccggtctcaatgacgcgccgcccatgccgaagggc
gaggccgccaagtccaagagccgacgccgcggcggtcgccgcggtcagggccaaggccag
ggtgagggcgcgtcgtccgggcaaaagcggggcggagcttccggcaaaccgcgtcagggt
ggagacggcgcacgcagcggcaagcctcagcgcaatcgccggggcagcggcggtcagcgc
cgcggcccgagcgccacagccgccgaataa
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