Oceanicaulis alexandrii: ABWI01_14235
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Entry
ABWI01_14235 CDS
T10771
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI01_14235 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oax03019
]
ABWI01_14235 (recQ)
03400 DNA repair and recombination proteins [BR:
oax03400
]
ABWI01_14235 (recQ)
Enzymes [BR:
oax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWI01_14235 (recQ)
Messenger RNA biogenesis [BR:
oax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWI01_14235 (recQ)
DNA repair and recombination proteins [BR:
oax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABWI01_14235 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HAD
Motif
Other DBs
NCBI-ProteinID:
XHC20310
LinkDB
All DBs
Position
complement(2936252..2938087)
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AA seq
611 aa
AA seq
DB search
MAHSDSTLSPQLDQARQTMADVFGYRDFRPGQAEIIDSVLKGHNVLAVMPTGRGKSMCFQ
LPALLRGGLTVVISPLIALMRDQVSALQAVGVNAAALTSTDEAQDREAAWRALDDGSLRL
LYMAPERMAVPGLAERLGRAGLSMIAVDEAHCVSQWGHDFRPDYLRISEFAQAAGRPQIA
AFTATADAAARRDIAGRLFEQAPDEFVSGFDRPNLHLAVGARRSGAAQIIDFVKARPDRA
GIIYCSSRKACDDIAAKLQAENVYALSYHAGLDAQTRSFRQDEFVKGDGVVMCATIAFGM
GVDKPDVRYVLHAALPSSMEAYYQEIGRAGRDGDPADTLMLWSLSDAALRRRQINDGDSD
EERKRMELRRLSALIAYCEAPQCRRQTLLGYFGDEIEPCGHCDLCDDPPKLIDGQVLAQK
AMSAIARTGQRFGLEHLISVLRGLKTDKVMARGHDALPTFGVGEDLSKDQWMSVFRQLFA
SGAIDQPIDGHGEWIITPKGKEILFGKLPIKLRPPEEQRGVRSARARPSDAADQLLSETD
RALYTALRKKRLELAKESGKPAYTIFADRTLIEMAASKPRSQEDLSRIFGVGARKLERYG
AEFLAVIESEI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacagcgattcgactctttcccctcagctcgaccaggcccgtcagacgatggcg
gacgtgttcgggtatcgcgatttccggcccggccaagccgagatcatcgacagcgtcctc
aaaggccacaacgttctggccgtcatgcccacagggcgcggcaaatccatgtgctttcaa
ttgcccgccctgctcagaggcgggctgacagtggtgatatccccgctgatcgccctgatg
cgagaccaggtcagcgccttgcaggccgtcggtgtgaacgccgccgccctgacctcgacc
gatgaagcccaggatcgcgaagcggcgtggcgcgccctcgatgacggcagcttacgcctg
ctatacatggcgccggaacgcatggcggttcctggactggcggagcggctgggccgggcg
ggcctgtcgatgatcgctgtggatgaagcccattgcgtgtcgcaatggggccatgatttc
cgccccgattatctcagaatctcagaatttgctcaggccgcagggcgtcctcagatcgcc
gccttcaccgcgaccgctgacgcggcggcgcggcgcgacatcgccggacggttatttgaa
caggcgccggacgaattcgtctcggggtttgatcgccccaacctgcatctggcggtgggg
gcccggcgatccggcgccgcccagattattgatttcgtgaaggcgcgccctgatcgcgcc
ggcatcatctactgctccagccgcaaggcctgtgacgacatcgccgccaagctgcaagcc
gagaatgtctatgccctctcctatcatgcgggtctggacgcccagacccgcagtttccgg
caggacgaattcgtcaagggcgacggggtggtgatgtgcgccaccatcgcgtttggcatg
ggtgtggacaaacctgatgtccgctatgtgcttcacgccgccctgcccagctccatggaa
gcctattatcaggagatcggacgcgccggacgcgatggcgatccggctgacacccttatg
ctctggtccttgtctgacgccgcgctacgccgtcgccagatcaatgatggggattcagac
gaagagcgcaaacgtatggagctgcggcgcctgtccgcgctgatcgcctattgcgaagcc
ccccagtgccgccgccagaccctgctggggtatttcggcgacgagatcgaaccgtgcgga
cattgtgatctgtgtgacgacccgcccaagctgattgatggccaggttctggcgcaaaag
gccatgtcagcgatcgcccgcacgggccagcgcttcggcctggagcatttgatcagcgtt
ctgcgcggcctgaaaaccgacaaggtcatggcgcgcggtcatgacgccttgcccacgttc
ggcgtcggcgaagacctgtccaaggaccaatggatgagcgtctttcgccagctcttcgcc
tccggcgccattgatcagccgatcgatgggcatggcgagtggatcatcacccccaagggc
aaagagatcctgttcggcaagctcccgatcaagctgcgtccgccggaagagcagcgcggc
gtacgctctgcccgagcgcggcccagcgacgcggccgaccaattgctctcggagaccgac
cgggcgctttatactgcactgcgcaaaaagcgtcttgagctcgccaaggagtccggcaaa
cccgcttacaccatctttgcggatcgcaccttgattgaaatggcggccagcaagccacgc
agtcaagaagacttgtcacgcatcttcggcgtaggcgcccgcaagcttgagcggtacggc
gccgaatttctcgctgtaattgaaagtgagatttag
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