Opitutales bacterium ASA1: ASA1KI_11330
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Entry
ASA1KI_11330 CDS
T10563
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oba Opitutales bacterium ASA1
Pathway
oba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASA1KI_11330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oba03019
]
ASA1KI_11330
Enzymes [BR:
oba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASA1KI_11330
Messenger RNA biogenesis [BR:
oba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASA1KI_11330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
BET66215
LinkDB
All DBs
Position
complement(1410931..1412349)
Genome browser
AA seq
472 aa
AA seq
DB search
MNTDTSVTFTSLGLSEPILRALGEKNYTHPSPIQARAIPFLLEGRDLLGVAQTGTGKTAA
FALPILHRLAASPKPASPGRPRVLILTPTRELAAQIGDNIALYGKHLRMRHTVIFGGVGQ
QPQVNALRSGVEIVVATPGRLLDLYEQHLIDLNLVEVFVLDEADRMLDMGFAPDVKRVIA
KLPRQRQSLLFSATMPPEIGEIARGLLRDPAQVAVTPVASTAERVEQRVCHVADKNDKHR
LLVHLLGEHDDGLALVFLRTKHGANRLAERLGRDGIRAAAIHGNKSQSARTRALDDFRQG
RTRVLVATDIAARGIDVKGIALVVNFDIPNEPESYVHRIGRTARAGAEGLAISLCDPSER
AYLRDIQRLIRQEIAVHQDHPFASKADASPDLREAPARRPQQRPAQQHARPQHARGEERR
RGDHPRPSSPARDSGAARPTAAPASAPARPAATAPAPEAPRKSRLFGFRGRR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagatacgtccgtcactttcacgtcgctcggtctctccgagccgattcttcgc
gccctcggcgaaaagaactacacccacccatcgcctattcaggcacgcgcgatccccttc
ctgctcgaaggtcgcgacctcctcggcgtcgctcagaccggcaccggcaagaccgccgcc
ttcgcgctccccatcctgcaccgactcgccgcgtcgcccaagcccgcttctccgggtcgc
cctcgagtgctcatcctcacacccacccgtgaactcgcggcccagatcggcgacaacatc
gccctctacggcaaacacctccgcatgcgtcacaccgtcatcttcggcggcgtcggccaa
caaccgcaggtcaacgctctgcgctccggcgtcgagatcgtcgtcgccactccgggccgc
ctgctcgacctctacgagcagcacttgatcgacctcaatctcgtcgaggtgttcgtcctc
gacgaggccgaccgcatgctcgacatgggcttcgcgccggacgtgaagcgcgtgatagcc
aagctcccgcgccagcgccaatcgctcctcttctccgccacgatgccgcccgagatcggc
gagatcgcacgcggtctcctccgcgaccccgcccaagtcgccgtcacgcccgtcgcctcc
accgccgagcgcgtcgaacaacgtgtctgccacgtggccgacaagaacgacaaacatcgc
ctcctcgtccacctcctcggcgaacacgacgacggcctcgccctcgtcttccttcgcacg
aagcacggggccaaccgcctcgccgaacgcctcggccgcgacggcatccgcgccgccgcc
atccacggcaacaagtcccaatccgcccgcacccgcgccctcgacgatttccgccaaggt
cgcacccgcgtcctcgtcgccaccgatatcgccgctcgcggcatcgacgtgaagggcatc
gcgctcgtggtgaatttcgacatccccaacgagccggaatcctacgtccatcgcatcggc
cgcaccgcccgcgccggggccgaaggcctcgccatctcgctctgcgacccgagcgaacgc
gcctacctgcgcgacatccagcgcctcatccgccaggaaatcgccgtccatcaggatcat
ccgttcgcctccaaagccgacgcttcgcccgatctccgcgaagcacccgcccgtcgtccg
cagcaacgccccgcgcagcaacacgcccgcccgcagcacgcccgtggcgaggaacgccgc
cgtggcgaccatcctcgcccgtccagccctgcccgcgactcgggagctgcgcgtccgacc
gctgccccggcatccgccccggctcgcccggctgcgaccgcaccggcacccgaagcaccg
cgcaagagccggctcttcggcttccgtggccgccgctga
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