Osmia bicornis bicornis (red mason bee): 114873656
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Entry
114873656 CDS
T06109
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114873656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obb03019
]
114873656
03041 Spliceosome [BR:
obb03041
]
114873656
03009 Ribosome biogenesis [BR:
obb03009
]
114873656
03016 Transfer RNA biogenesis [BR:
obb03016
]
114873656
Enzymes [BR:
obb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114873656
Messenger RNA biogenesis [BR:
obb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114873656
Spliceosome [BR:
obb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114873656
Complex C
U4/U6.U5 tri-SnRNP related factors
114873656
Ribosome biogenesis [BR:
obb03009
]
Eukaryotic type
Pre-60S particles
Helicases
114873656
Transfer RNA biogenesis [BR:
obb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114873656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
114873656
NCBI-ProteinID:
XP_029038057
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MANFTDDLFDVFDETDDILEIIPTPVKPKDVNTTPNEKETNAEGLKRELNNESDDIISKK
LKLDPVLEDLNIEELAPRIKIHTIETIESSTHEVAVPPDYDYVPLEHKQSKPAKEYKFVL
DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYR
EFYEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDK
ERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVADLHKQPCHVVYTDYRPTPLQHYI
FPVGGDGIHLVVDENGQFKEENFNRAMACLQHGDAAKGDTKGRKGGIRPSNAGQTNIFKM
VKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVDEVFNNAMDVLSEEDRR
LPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVL
FTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVIGKAIIQGKPD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPILYNKVKELQATYNAVTI
DKYSQISSYHSIREQLERLSIEFRSFLTKPEYLLPFLQPGRLVKVKNANETFDWGIIVNF
KKKNPKNPTKENTVIIIDILLHISKESSEGCPVPCREGEEGDVEVVPVLHTLISQISSLR
LYYPKDLRPSDNRKSVLKTIQEVKKRFPNGPPLLNPITDMHIADEGFKDIIKKIEVLEEK
LYAHPLHKDPTINTLYEQFLHKEELGNQLKQAKLELKQAKSILQMDELKCRKRVLRRLAY
CTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNEMPK
STEELSGPLRQMQDLARRIAKVSTEANLELDEDAYAERFKPYLMDVVYAWCKGASFLKIC
KMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgacgatttatttgacgtttttgacgaaacagatgatatactagaa
ataatcccgaccccagttaaaccaaaggatgtaaatacaacaccaaatgaaaaggaaaca
aatgcagaaggactgaaacgagaacttaacaatgaatcggatgacataatttctaagaaa
ttgaagttggatcctgtcctagaagatttaaatatagaagaactagcaccacgtattaaa
atacataccatagaaacaattgaatcatctactcatgaggttgctgtaccaccagattat
gactatgtaccattggaacataaacaaagcaaaccagctaaagaatataaatttgtgtta
gatccttttcaaaaagaagcaatattatgtattgagaataaccagtctgttttagtttct
gcgcatacatcagctggtaaaactgttgttgcagaatatgctatagcatgttcattaaga
gacaaacaaagagtaatctatacaactcctataaaagcattgagtaatcaaaagtataga
gaattctatgaagagttcaaggatgttggtttagtgactggagatgttacaattaatcca
acagctagtgtgcttatcatgactactgaaattttaagaaacatgctttacaggggatca
gaggtaatgcgtgaagttggttgggtaatttttgatgaaatccattatatgcgtgacaag
gaaagaggtgttgtttgggaggaaacattaatattattacctgacaatgtacattatgta
tttctttctgcaactatacctaatgcaagacaattcgtagaatgggttgcggatttacat
aaacaaccatgtcacgttgtttatacagattatagaccaactcctctgcaacattacata
tttcctgttggtggagatggaatccatttggttgtagatgaaaacggacagtttaaagaa
gaaaattttaacagagcaatggcttgtttacaacatggtgatgcagctaaaggagacact
aagggtcgtaaaggtggtattcgtccttcaaatgctggacaaacaaatatttttaaaatg
gtgaaaatgattatggaaagaaattttgctcctgtaattatatttagcttttcaaagaaa
gattgtgaaatttatgcaatgcaaatggctaaattggatttaaatacattagaggagaag
aaactagtagatgaagtttttaataacgcaatggatgttcttagtgaggaagatagacgt
ttgcctcaagttgaaaacgtgttacctcttttaagacgaggtataggtattcatcatggt
ggtcttttaccgattttaaaagaaaccgtggaaatattatttggtgaaggattgatcaag
gcactatttgcaacagaaacttttgcaatgggtctaaacatgccagcacgaacagtttta
ttcacagcatcacgaaaatttgatggtaaagatttccgttggattacatccggagaatac
atacaaatgtctggtagagcaggcagaagaggtttggacgaaaaaggaatagtaatatta
atgatagacgaacaagttagtccagttattggaaaagcaattatacagggaaaaccagat
cctattaattcagcatttcacttaacttacaacatggttttgaatctgttgagagttgaa
gaaattaatccagaatatatgcttgaaagaagtttttatcaatttcaaaatcaagcctct
attcctattttatacaataaggtaaaggaattgcaagctacatataatgcagtaactatt
gataaatatagtcagatatcttcttatcacagcatacgtgaacaacttgaacgccttagt
atcgaattcagatcttttttaacaaaaccagaatatttacttccattcttgcaacctgga
agattggtaaaagtgaaaaatgcaaatgaaacgttcgactggggtattattgtgaacttt
aaaaagaaaaaccctaaaaatccaacaaaagaaaatacagttattattattgatatcttg
cttcacatttctaaagaatctagcgaaggatgcccagtaccctgtcgtgaaggagaagaa
ggcgacgtggaagtagttccagtcctacatacattaatttctcaaattagttcacttaga
ttatattatccaaaagatttaaggccatctgataatagaaaaagtgtattaaagacaata
caggaagtcaagaaaagatttccaaatgggccaccattattgaatcctattacggatatg
cacattgcagacgaaggttttaaagatattattaaaaagattgaagtattagaagaaaaa
ttgtatgcccatcctttacacaaggatcccactataaatactttgtatgaacaattcctt
cacaaagaggagttggggaatcaattgaaacaagccaagttggaattgaaacaagctaaa
tccatacttcaaatggatgaattaaaatgtagaaaacgtgtactgcgaagattagcctac
tgcacagcatcagatgttatagaattaaagggccgagtagcttgtgaacttaatggagct
gatgaattgttgatgacagaaatgatctttaatggattgtttaattccttaagcgtacct
caaatggtagcgttgattagttgtttcgtttgcgatgacaaatcaaatgaaatgcccaaa
agtactgaagaattaagtggtccacttcgacagatgcaagatttggcacgaagaatagca
aaagtatctacagaggctaatttagaattagatgaagacgcatacgcagaaagatttaaa
ccatatttaatggatgttgtatatgcttggtgtaagggtgctagttttttaaaaatttgt
aaaatgacggatatatttgaaggttcaattatacgatgtatgcggcgtttggaagaagtt
cttagacaattatgtcaagcagcaaaaaacattggaaacacagatttagaaaataaattt
agcgaagcgattaaacttataaaacgtgatattgtttttgctgcatctttgtatttataa
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integrated database retrieval system
