Osmia bicornis bicornis (red mason bee): 114877171
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Entry
114877171 CDS
T06109
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03020
RNA polymerase
obb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114877171
09124 Replication and repair
03420 Nucleotide excision repair
114877171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obb03021
]
114877171
03400 DNA repair and recombination proteins [BR:
obb03400
]
114877171
Enzymes [BR:
obb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114877171
Transcription machinery [BR:
obb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114877171
DNA repair and recombination proteins [BR:
obb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114877171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
114877171
NCBI-ProteinID:
XP_029045239
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKESQDQQNADRKPGHGGCGRYQ
PNLQRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtccgactccaaagcgcctttgcgaactgtaaaaagggtccaatttggtatt
ctttcacccgatgaaatacgtcggatgtcagtcacagatggaggcatacggtttccagaa
actatggaaggtggtcgcccgaaactgggtggacttatggatcctagacaaggtgtcata
gatagaaattctagatgccaaacatgtgcaggaaatatgacagaatgtccaggacatttt
ggccatatagatttggccaagccagtttttcatgttggttttataacaaaaacaataaaa
atcttaagatgcgtgtgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
attaaggaaattgtaatgaaaactaaaggtcaaccacgtaaacgtctcacatttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgaaatggatattaataaagag
agccaggatcagcagaatgcagatagaaaacctgggcatggtggttgtggtagatatcaa
ccaaatcttcagagatcaggtttagatgttactgcagaatggaaacatgtaaacgaggat
tctcaagaaaagaagatagcgcttaccgcagaaagagcatgggaaattttaaaacacatt
acagacgaagaatcgtttatccttggtatggacccaaaatttgcacgaccagattggatg
gtggtcacagttttgcctgtcccacctctttcagttagaccagcagttattatgtatggt
tctgccaaaaatcaagatgacttgacacacaaactggcagatattataaaagcaaacaat
gaattgatccgaaacgaacaagctggagctgcagcgcatgtaatatcagaaaatataaaa
atgttgcaatttcatgtagcaactttggtcgacaacgatatgcctggcatgcccagagcg
atgcaaaagtcgggcaaacccttaaaagctataaaagcaagactgaaaggaaaagagggc
agaataagaggaaatttgatgggtaaacgtgttgacttctcagcacgtaccgtcatcaca
cccgatcccaatttgcgaatcgatcaagtaggtgtacctcgaagcattgcccaaaattta
acatttcctgaaattgtgacaccatttaatattgataaaatgcaagaactcgttagacgt
ggaaattcacagtatccaggagccaagtacattgtcagagacaatggagaaaggatagat
ttaagatttcatccgaaaccgtctgatttgcatttacaatgtggttatagagtggaacgt
cacattcgtgatggcgatttagtcattttcaatcgtcaacctactctccacaaaatgagt
atgatgggtcacagagtaaaagttctaccgtggagtacattccgtatgaatcttagttgc
acgtcaccttataacgctgattttgacggagatgaaatgaatttgcacgtacctcaatcg
atggagactagagcggaagtagaaaatattcacgtgacaccacgacaaatcatcacaccg
caagctaataaaccagttatgggtattgtacaggatacacttaccgctgtaagaaaaatg
acgaaaagagatgtctttattgaaaaagaacaaatgatgaatattcttatgttcttgccc
agctgggatggaaaaatgcctcagccgtgtatattaaaaccaaagcctttgtggaccggt
aaacaaattttctccctgattataccaggcaatgtaaatatgataagaactcacagtact
catcccgacgaagaagatgacggtccatataaatggatatcacctggtgacactaaagtt
atggtagaacatggagagctcgttatggggattctttgtaagaaaactttgggtacatct
gctggatctctgcttcacatttgtatgttggagctaggacacgaggtctgtgggcgattt
tatgggaacatccaaacagtgatcaacaactggttgctattggaaggtcattccattggt
attggtgataccatcgccgatccacagacctacttagaaattcagaaagcaattaaaaaa
gctaaagaggacgtgatagaagttattcaaaaggctcataatatggagctggaacccacc
cctggaaatacgttgaggcaaactttcgaaaatcaagtaaacagaattttgaacgacgct
cgtgacaagactggtggttctgctaagaaatctttaaccgagtacaacaatttaaaggct
atggtagtatcaggatcgaaaggatctaatattaatatctctcaagttatcgcttgtgta
ggtcaacaaaacgttgagggtaaacgaattcctttcggttttcgtaagagaactttaccg
catttcatcaaagatgattacggtcctgaatccagaggattcgtcgagaactcgtatctt
gctggtctaactccgtctgaattttattttcacgccatgggaggtcgcgaaggtctcatc
gatactgctgtgaaaactgcagaaactggatacattcaacgccgtctgataaaagctatg
gaatctgtaatggttcattacgatgggacagttaggaactctgtaggacaacttattcag
ttgcgttatggcgaggacggtttatgcggagaaaccgtcgagttccagaatctgcctacc
attaaattaagcaataaggcatttgagaagaagttcaaattcgatcccaccaacgaacga
tatctccgtcgcattttcaatgaagatatcgttagagaaatgatgggatccggggaagta
atatctgaattggaaagggaatgggaacaattgaacaaggatcgtgctatactcagagag
atatttcctagcggagaatcaaaagttgtattgccttgcaatcttcaaagaatgatttgg
aatgtgcaaaagatattccacatcaacaaacgagcaccaacagatctcagtcctatgaga
gtcatccaaggtgttaaagatcttttggataaatgtattattgtggctggtgacgataga
ctcagcaaacaagctaatgaaaacgctacattattattccaatgtttagtaagatctact
ttatgtacaaagtgtgtttctgaagaattcaggttatccagtgaagcttttgaatggctt
attggagaaattgaaactaggttccagcaagcccaggtatcgccaggtgaaatggtcggt
gctttagctgctcagtctcttggtgagcctgcaacccagatgacactgaatactttccac
tttgctggtgtatcgtcgaagaacgtaactcttggtgtacccaggctaaaggagattata
aacatcagcaagaaaccaaaggctccgtcgttaacggtattcctaaccggagcagcagca
agagatgctgagaaagcaaagaatgtactttgccgattggaacacacaacattgaggaaa
gttacagcgaatactgctatttactacgatccagatccacagaatactgtgatcgcagag
gatcaagaattcgtgaacgtttattatgaaatgcctgatttcgatccaaccaaaatatcc
ccgtggctgcttcgtatcgagttagaccgaaagagaatgactgataaaaaattaacaatg
gaacaaatagcggaaaagattaacgctggctttggggatgatctgaactgcattttcaac
gacgataacgctgagaaattagttttacgaattaggataatgaacagcgatgataacaag
ttccaagataccgaagaagaaactgtagataaaatggaggacgacatgttccttcggtgt
atagaggcaaatatgctcagtgacatgacattacagggtatcgaggcaataggcaaagtt
tatatgcatttaccgcaaaccgattccaagaaacgtatcgtcatcactgaaactggtgaa
tttaaagcaatagctgaatggttattggaaacggacgggacaagtttaatgaaagtattg
agcgagagagatgtcgatcctgttagaacattcagtaatgatatctgtgaaatattccaa
gtccttggtatagaagctgtcaggaagtcggtagaaaaagaaatgaacgctgttttgcaa
ttttatggtctttatgtaaattatcgtcatctcgctttgctttgcgatgttatgacggcc
aaaggtcacttgatggctattacgcgtcacggaataaacagacaggacactggtgcactt
atgagatgctcctttgaagaaacagtggatgttttattggatgctgcatctcatgcagag
gttgatccaatgagaggagtatctgaaaacattattatgggacaacttccacgaatagga
acaggatgtttcgatttgctattagatgctgagaaatgtaaagctggtattgaaatacca
atggcggtaggtgctggtgtaatgggaacagccggaatgttctttggcagtgttgctaca
ccaagtatgagtcctcaaatgaccccttggatgggtgctaccccgggttacggagcatca
agcatgtctcctgcactgggaagtggtatgacaccaggtggtgcatgcttctcaccatca
ggagcgtcggatgcttcaggactttcacctgcctattccgcgtactcgccacaacctgga
agtcctggcagtccaggccccagcatgagtccatatccaatgtcaccggcaggaggtgca
tcgcctagttattcgcctacatcgcctgcctatttgccaacttcaccgagtataacacca
tcgagtcctaactactcgcctaccagtccaacgtattcacccaccagtccaaattattcg
ccaacgagtccaagttattctccgacaagtccaagttactcgccaacatcaccgagttat
tcgccaacgagtccgagttactcgccaacgtcgccgagttattcaccgacgagcccttcg
tactcgccaacgtcaccgagctactcgccaacgagtccgagttactcgccaacgtcgccg
agttattcaccaacgagtccttcgtactcgccaacgtcaccgagctactcgcccacgagt
ccttcatactcgccaacgagtccttcatactcgccaacgtcgccgagctactcgcccacg
agtccgagttactctccaacgagtccaagctattcgcctagttcaccaaattacacgcca
gcctcgccgtcttattctccaacaagtccaagttactcgccgagttctccacaatattca
cctgccagtccaagttactcaccgagcagtccaaaatattcgccaacgagtccgagttat
tcaccgacgtcaccgtcgtttgctgggacctcgccacagtacacgccagcgagtccaact
tactctccaacgagcccaacctactcaccaacgagtccatcgtactctcctagttcgcca
caacacacagcgtcagggagtacaaggtactcgccgagtagtccaaattactcgcccact
agcccgacgtattcgcctacgagtcctcagtactcgccatcgagcaccaagtactcgcct
accagcccaacgtacacaccaacgagtccgagttattcgcccacgagtccaacgtactct
ccaccggtaccaggctactcgccaacgagtcccacgtattctccggcatctccagcctac
gagacagacgactaa
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integrated database retrieval system
