Osmia bicornis bicornis (red mason bee): 114879215
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Entry
114879215 CDS
T06109
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03013
Nucleocytoplasmic transport
obb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114879215
03015 mRNA surveillance pathway
114879215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obb03019
]
114879215
Enzymes [BR:
obb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114879215
5.6.2.5 RNA 5'-3' helicase
114879215
Messenger RNA biogenesis [BR:
obb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114879215
mRNA cycle factors
Common to processing body (P body) and stress granule
114879215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
114879215
NCBI-ProteinID:
XP_029049773
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDTAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNICRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNTANPGSHFMSTSMYDAREALIPGSVYDRSGSQVNGQQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatacggacccagcagtcagaccctcacgtttctcgacacggaggaa
gcggatctaatcggtgcggacactcagggcagcgagtttgactttacagattttacgtta
ccttcgccgagtcaaacgcaagcttcgcaacacgatactgctcaaagtcaacctaaccag
cccgtacaggttaacggaacaagcggcagttcgtctctcgagttgaaaatttccggggca
gcgcaaagtctagccgaattacagttcgaggaggaagaagaggaagcttactataatcgt
gatttgccagaacatgcctgcaaatactgtggaattcatgaagcatcctgcgttgtcatg
tgcaatatctgtcgcaaatggttctgcaacggacgtggaaacacatctggttcgcacatc
atcaaccaccttgtccgagctaagcacaaggaagttactttacacagagacggccctttg
ggagaaactgttctcgaatgttattcctgcgctgtccggaatgttttcgtcctcggtttc
atccctgcgaaagcagattctgttgtagtgttactttgtcgtcaaccatgcgcggctcaa
agttccttgaaggacatgaactgggatcaagaacagtggaaaccgttgatcgaagaccgt
agctttttggcatggttagtgaaaattccatccgaacaagaacagttgcgagctcgacag
atttctgcccaacagataaataaattggaagaattgtggcgtgataacgtcgacgcgaca
tttcaagacctcgagaaacctggagtggacgaagaaccgcaacaagttttgttgcggtac
gaggatggttaccagtatcaaaacatatttggtccacttgttaaattagaagccgattac
gacaaacgtctaaaggaatctcaaactcaagaaaacatcgaagttcgttgggacgttgga
ttgaataaaaagaccattgcctatttcatgttagcgaaaaccgacggagacatgaaattg
atgcacggagatgaattaagacttcgctatttgggcgagcttcacaaaccttggtcagga
attggacacgtgataaagattcctgataattacggagaagaagtcggtatcgagttgaag
aataattctggagctcctacagagtgtgtcagtaactttgttgttgattttatttggaaa
agtacaagttttgatcgcatgcaattagcattgcgaaaatttgccgtggacgacacctcc
gtatctggttacatataccataggttgttaggacacgaagtggaagaagtcctgtttcga
tgtcaccttccgaagcatttcagtgctcctaatttaccggatttgaatcgttctcaagta
tacgctgtgaaacacgccgtacaaagacctttgtctctaattcaaggaccacctggcacg
ggaaaaactgtgaccagcgctacgatagtttatcaactggtcaaacagaacggcggtcct
gtgttggtatgcgctccttcgaacacggccgtcgatcagttgaccgagaaaatacacaag
tctaatctaaaagttgtacgactttgcgcgaaatcccgagaagcgatcgattcaccggtc
agctttcttgctcttcacaatcaaataaaaaatatggaaacaaacacggagttgcaaaag
ttacagcagttgaaggacgaaaccggagaattatcgagcgtcgacgagaaacgttataga
cttttgaagaaagcggcagagaaagaattgttggaggcagccgatgtgatttgttgtact
tgcgtcggtgccggtgatccaaggttgcacagactgaaattccattctattcttatcgac
gaaagtatgcaagcaaccgaacccgagtgcatggtaccagttgtactcggtgctaagcaa
ttaattctggttggtgatcattgtcaattaggacctgttgttatgtgcaagaaggcagcc
agagcaggtttatctcaatctcttttcgagagattagtcgtacttggaatcagaccgttc
cgtttggaggtacagtatcgtatgcatccggacctctcgcgtttcccatcaaacttcttc
tacgagggttccttacaaaatggtgtatgcgcggacgaaagaaaactgttaaagatcgat
ttcccttggccagcacccgacaaacccatgttcttttatgttacccaaggacaagaagaa
atcgctggaagtggcacgtcctacttgaatcgtacagaagcgtctaacgttgaaaagata
gcgacccggttcttgcgttgcggagtaaaacctgaacaaatcggagtgataactccgtac
gagggacagagggcctatttggttcagtacatgcagtaccaaggctcgttgcattcgaaa
ttgtatcaagaaatcgaggtcgccagcgtagacgcgtttcaagggagggaaaaagatata
ataatcatgtcctgtgttcgatcgaacgaacatcaaggtatcggattcctgaacgatccg
agaagattaaacgttgccttgacccgtgcaaaatacggcataataatcgtagggaatcca
aaggtgttgtccaagcagccgctctggaatcatttattgagtttctacaaagaacaaaag
gtactggtcgaagggcctttgaataatcttaaagaatcaatgattcaatttgccaagcca
aagaaattggtgaataccgctaatccaggctcgcatttcatgtccacctcgatgtacgat
gcgagagaagctcttattccaggatccgtatacgatcgttcgggtagccaagtgaacggt
caacagaatcacaatccgtattatcagaggaacgtacctttggacatattcagcagaaca
cacgatacgattagttacattagtccagagagagctcaggcagcgatgaacaacgtacca
gttccagttggaatgtttatgaacatggcgcacgtgccgccgcgtttctataatcaacat
caacaagcgttacaggccagacagaatcaacgtaatcgtcgtggaaccgctttgtcgaag
aataaacaaggcccgcgaatgggcaagttgagtcaaaccgaacagaatacccaaccgtac
agtcagccaggtttaccgttgacccagggtacgacacagggtatgtcacagccaggcttt
agtctttctcagcctggattgagtcaagcggaactttcacaggattcgtttgccgtcggc
gaattccaatcgcaaatggacggtctattgtcgcaagattcaacttatcaaggtgatcga
agtggtttttatcaatctggacagtcacaagccgggggacaattctcccagccatactga
DBGET
integrated database retrieval system
