Osmia bicornis bicornis (red mason bee): 114880309
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Entry
114880309 CDS
T06109
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb04382
Cornified envelope formation
obb04512
ECM-receptor interaction
obb04518
Integrin signaling
obb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114880309
04518 Integrin signaling
114880309
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114880309
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114880309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
obb04147
]
114880309
00536 Glycosaminoglycan binding proteins [BR:
obb00536
]
114880309
Exosome [BR:
obb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114880309
Glycosaminoglycan binding proteins [BR:
obb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114880309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114880309
NCBI-ProteinID:
XP_029052017
LinkDB
All DBs
Position
Unknown
AA seq
1955 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVSAQFNHTSWSNDPPPVVPLGRGDIGKPNSTDDEYIAPRWRA
FLSNNEGSEEADRRNLEPYDEGRNYDDGYNRYPDGGEYGQRSGTDGSGGYQRGYGGGDRR
TYSQSHSQSHSQSHSQSQGQGTQDPYNQGPVDPYGRSRGYEDTYGRGAEVEGQRSRDPYG
DGYGENRGSGDAYGREDPYGRGYSQGQGGGYGAAGGSDNYPSSYSAVPIPGRAQPKNCTG
SACCVPKCFAEKGSRGSPGVMGPQGPKGQRGFPGAEGLLGPKGEKGDPGPQGPRGPKGDR
GKMGMPGFPGINGVPGVQGSPGSPGLPGRDGCNGTDGEPGLRGLPGEPGPRGFRGTPGPK
GDKGQPAFAGMFPVGQKGEPGIDGVRGPPGPPGPQGEHGIPGSKGERGPYGGSGIPGPKG
EKGNMGLGFEGVKGDKGQKGEQGPPGSSVPLVPFEGVPPEVTGEKGEPGGKGDKGEMGLD
GQKGEPGLIGDHGIPGYSGGKGEKGLPGAPGIRGRDGFSGPPGPPGRKGDRGYDGLDGIP
GRPGQKGQPGRDGPMGTSGLRGPPGPPGGGKGTPGPPGPKGPQGFPGPIGPRGADGYPGD
PGPRGPIGMTGGPGSQGIPGPEGLPGEKGGKGEPGITGFPGPTGPRGFDGPPGSPGPRGL
QGEKGLSIVGPKGMDGAPGLDGEKGQKGERGYSGPRGFPGDSLDGIPGSPGEPGFPGEPG
TPGKDGAPGFPGAPGEKGDIGGRCQDCLPGLSGLKGDRGLDGTPGLPGPRGPPGERGFPG
EAGADGLPGQIGRPGPPGKDGIPGSAGPQGEPGTPAIVSESSIKLEKGERGLRGEPGRPG
PPGPQGPPGEKGALGFEGFPGAKGTAGDRGFPGQDGIPGRPGVPGRKGESGISVKGEPGE
PGRIGATGFKGEPGLYGQKGEPGECPPLTWVKDLKGDRGSQGEKGEPGPPGRDGPSGDKG
LQGFSGPPGPPGQIGPPGPVGPRGLPGPRGDKGDMGPMGFPGEPGREGPRGFPGAPAPKG
DKGEPGISVKGSPGLPGPPGEKGEKGLPGPPGKEGQVGFPGLPGFMGEKGDVGVPGISGL
PGAPGGKGDTGPVGPRGPPGVAGIPGLDGMKGEPGLPGEPGRAGLPGFPGAKGDRGEPGI
DGPKGYPGRRGPPGLQGRPGVEGAPGMKGERGEKGSSGFPGLPGMEGRPGPPGSSGDKGD
DGLPGPPGLVGPIGFDGLKGDRGPPGLPGRKGEPGQVSEKGQKGEPGIPGIRGPSGPSGR
DGIDGAKGESGIPGIGRDGLPGPKGEPGIPGRDGMPGFQGQKGDTGVRGFPGLKGDFGPP
GASGEPGTPGIDGLPGDRGDIGPPGPPGFPGLDGDMGAPGRPGLNGSKGERGFSGPSGLP
GIAGGPGEKGDRGPPGPTIQVKGEKGEPGIPGLSGAPGEKGDRGLEGLAGYDGEKGDRGA
PGPAGNPGPPGHSGAKGDEGPRGPSGILGLTVKGEKGLPGMPGKHGREGIPGRPGEKGEQ
GLPGLPGYKGDQGPYGPIGPQGEKGDMGPAGTPGLPGRDGRPGLEGMPGLLGEKGDKGDI
GLRGLPGIPGQKGEAGFPGPSGLDGLPGEKGDRGWDGLNGAPGTSGEKGDRGYPGPAGLK
GPPGYLGPKGDKGEDCIEPPMGPKGDRGYPGPTGPPGPQGEKGLPGPPGFSGLDGVKGAS
GLPGPPGPAGLPGLPGPVGSPGLPGLQGPVGVPGPAGEPGQPCDVIPDYLTGILLVRHSQ
SQTVPVCEPGHIKLWEGYSLLYTDGDERAHSQDLGYAGSCVRKFSTMPFLFCDVNNVCHY
ASRNDRSYWLSTNSPIPMMPIEETAIEEYISRCVVCEVPANVLAVHSQSLSIPECPQGWT
GLWIGYSFVMHTGAGSQGGGQSLSSPGSCLEDFRATPFIECNGAKGHCHYYANEFSFWMA
SIEDRQQFQRPEKQTLKAGNLRSRISRCQVCIKNT
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcgtccgcagtcttcctagccgggattgtcagt
gcgcaatttaatcacacatcatggtcgaacgatcctccaccggttgttccactgggacga
ggtgatatcggaaagccaaatagtacagatgacgaatatattgcacctagatggagagct
tttctttcgaacaacgaaggttcagaggaagcagacaggcggaatttagaaccatatgac
gaaggccgaaattacgacgatggatacaacagataccccgatggcggtgaatatggtcaa
agatctggaaccgatgggtcgggaggatatcaacgaggttatggaggcggagatcgaagg
acctacagccagagccatagccagagccatagccagagccatagccagagccagggacaa
ggcactcaggatccttacaatcaaggacccgttgatccttacggaagatctcgaggttat
gaggacacttacggaagaggagcagaagtagaaggacaacgttctagagatccttatggc
gatggctacggagaaaatcgtggatccggagacgcttacggtcgtgaagatccttatggc
cgaggatactcgcaaggtcaaggaggaggatacggtgcagctggtggctcggacaattat
ccgagtagttattcggctgtgccaattccaggacgagctcaaccaaagaattgcaccgga
tcagcttgctgtgtaccgaaatgttttgcagaaaaaggctcgagaggttcaccaggtgta
atgggaccacagggtcccaaaggtcaaagaggatttcctggagcagaaggtctcctagga
ccgaaaggagagaaaggtgatcctggtcctcagggaccacgtgggccaaaaggtgacaga
ggaaaaatgggtatgcccggattccccggtataaatggtgttcccggagttcaaggttct
cctggatctcctggtcttcctggtcgtgacggatgcaacggaacagacggtgaacctggt
cttcgtggtcttcctggagaacccggtcctcgtggttttcgaggtacgccaggtcctaaa
ggagataaaggtcaaccagcgtttgctggcatgtttcctgttggtcagaaaggagaacca
ggtatcgatggtgtgagaggacctccaggtcctccaggacctcaaggagaacacggaata
ccaggatcaaagggtgaacgtggtccttatggtggatctggaatacctggtccaaaagga
gagaaaggcaacatgggtctcggatttgaaggtgtaaagggtgataaaggtcaaaaggga
gagcaagggccgccgggttcatctgttcctcttgtaccattcgaaggagtgccaccagaa
gttacgggtgaaaagggagaacctggtggaaaaggagacaagggtgaaatgggacttgat
ggtcaaaaaggagaaccaggtttaattggagatcatggtatacctggctattcaggtggg
aaaggagagaaaggtcttccaggagctcccggtattcgcggtagggatggtttctcagga
cctccaggtccacctggacgtaaaggagatcgtggttacgatggattagacggaattcct
ggtcgtcctggtcagaagggacaaccgggtcgagatggacctatgggtacttcaggatta
cgaggacctccaggtccgccaggaggcggtaaaggtacgccaggtccaccaggaccaaaa
ggacctcaaggttttccaggtccaattggacctcgtggtgctgatggatatccaggagat
ccaggtccaagaggtcctataggaatgaccggtggtcctggttcacaaggtattcctggt
cccgagggattgccaggagaaaaagggggcaaaggagagcctggaatcactggattccca
ggaccaacaggacctagaggtttcgacggtcctcctggttcgcctggtccacgaggtctt
caaggagagaaagggctgtcgattgtgggccctaaaggaatggatggagcacctggttta
gatggagagaaaggacaaaagggagaacgcggttattcaggaccgcgtggattcccaggg
gactctttggatggaattcctggatcgccaggtgaacctggttttccaggagagccagga
actccaggaaaagatggtgctccaggttttccaggagctccaggtgaaaagggagatatc
ggaggacgttgtcaagattgtttgccaggactatcaggacttaaaggagatcgtggtctc
gatggtactcctggtcttcctggaccacgtggtccaccaggagaacgaggattccccggg
gaagctggtgctgatggactgcctggacaaattggacgaccaggaccaccgggtaaagat
ggtattcctggttcagccggccctcaaggagaaccaggtacgccagcaattgtttcagaa
agttcgattaaactggagaaaggtgagagaggtttacgaggcgaacccggaagacccggt
ccaccgggtccacaaggtcctcctggagagaagggtgcacttggattcgaaggattcccg
ggtgccaagggtacagctggagatcgtggattccctggacaagatggcatacctggtaga
ccaggtgttccaggacgaaaaggagaaagtggtatcagcgtgaaaggagaacctggagaa
ccaggtcgaataggtgcaaccggattcaaaggtgaacctggtttgtacgggcaaaaagga
gaacctggcgagtgtccaccattgacatgggttaaggatctaaaaggtgatagaggatct
cagggtgaaaaaggagaacccggacctccgggaagagatggaccaagtggtgacaaaggt
ttacaaggtttttcgggaccacctggtcctcctggacaaatcggtccacctggaccagtt
gggccacgaggattaccagggccgcgaggtgataaaggtgatatgggacctatgggtttc
cctggagagcctggacgtgaaggaccaagaggattccctggtgctccagctccgaaagga
gacaagggtgaacctggaatatcagttaaaggtagtcctggtttgcctgggccaccagga
gagaaaggagaaaaaggtttaccaggaccgccaggaaaagaaggacaagtcggcttccct
ggtctgccaggatttatgggagaaaagggtgacgttggagttccaggaataagtggttta
cctggtgcacctggagggaagggtgatactggaccagttggaccccgaggtcctcctggt
gtagcgggaattcctggtctagatggaatgaaaggtgaacctggattaccgggagaacca
ggcagagctggtcttccaggattccctggtgcgaaaggagatcgaggcgaaccaggtatc
gatggaccaaaaggttatcctggtagacgtggtccacctggcttacaaggtagacctggt
gtagaaggtgcacctggaatgaagggagagcgaggtgagaaaggttcatctggtttccct
ggattacctggcatggaaggaagacctggaccacctggttcatctggagataaaggagat
gatggccttcctggccctcctggtttagtgggtccaattggattcgacggacttaaaggt
gatcgaggtccaccaggtttgccaggtcgtaaaggtgaaccgggtcaagtgtcagagaaa
ggtcaaaagggtgagccaggtataccaggaatccgcggtccttcgggtccttctggtaga
gatggtattgatggtgcaaaaggagaatctggaatacctggtatcggtcgtgatggatta
ccaggaccaaagggagaacctggtataccaggtcgtgatggtatgccaggatttcaagga
caaaaaggtgatacaggagttagaggattccctggacttaaaggagatttcggaccacca
ggtgcatcaggtgaaccaggaacacctggaatcgatggtttgcctggcgatcgtggtgat
attggtccacctggacctcctggtttccctggtctagacggtgatatgggagctccaggg
cgtcctggacttaacggatccaaaggagaacgcggtttctcaggtccttctggtcttcct
ggtattgctggtggacctggagaaaagggtgaccgtggaccacctggcccaacaattcag
gtcaaaggtgaaaaaggtgaaccaggtattcccggattatcaggtgcacctggagagaaa
ggtgatcgtggtttagaaggtcttgctggatacgatggtgaaaagggagaccgaggtgca
cctggtccagctggaaacccaggaccaccaggacatagtggtgctaaaggtgacgaagga
ccacgcggaccctcaggcattttaggattaactgtcaaaggtgaaaaaggtttaccaggt
atgccaggaaaacatggacgagagggaataccagggcgaccaggagaaaaaggagagcaa
ggattgccaggtctgccagggtacaaaggagatcagggtccttatggtcccattggccca
cagggtgaaaaaggtgatatgggccctgcgggtactcctggtctaccaggtcgtgatgga
cgtccgggtcttgaaggaatgccaggtttactgggtgaaaaaggtgataaaggagacatt
ggtctacgaggattgcccggtattccaggacaaaagggagaagcaggatttccaggacct
agcggattggatggacttcccggagaaaagggtgacagaggctgggacggactgaatggt
gctcctggaacttctggagagaaaggtgacagaggatatcctggtccagcaggattgaag
ggtccgcctggttatctaggtccaaaaggtgacaagggtgaagattgtatcgaacctccc
atgggaccgaaaggagatcgtggataccctggacctacgggtccaccagggccacaagga
gaaaagggacttccgggaccaccaggattctcaggattggatggagtgaagggtgcatcc
gggcttccaggacctccaggcccagctggtttgccaggtctacctggccctgtcggttcg
cctggtttgccaggtttgcaagggcctgtgggagttccaggtcctgcaggtgaacctgga
caaccgtgcgatgtgatccctgattatcttactggtatcttgttggtcagacacagtcaa
agtcaaacggttccagtttgcgagccaggacacatcaaactctgggaagggtacagttta
ttgtacacagatggtgatgaaagagcgcattcgcaagatttaggttacgctggttcctgc
gtaagaaagttctcgactatgccattcctcttttgcgacgtcaacaacgtgtgccattat
gccagtcgcaacgatcgttcttactggctgtcgaccaatagtccaattcccatgatgcct
attgaggagacggcgatagaagaatacatctccaggtgtgtggtatgcgaagttccagcg
aatgtgttagcagtgcacagtcagtcattgagcattccagagtgtccacaaggatggacc
ggtctttggatcggatacagtttcgtcatgcatactggtgccggctcccaaggtggagga
cagtcactgtctagtcctggatcctgtctggaggacttccgtgccacgccgttcatcgag
tgcaacggcgccaaaggacactgccattattatgcgaacgaattcagtttttggatggcc
agcatcgaagataggcaacaattccaaaggcccgaaaaacagaccctgaaggcaggtaac
ctcaggtcccgaataagtcgctgccaagtgtgtataaagaacacgtaa
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integrated database retrieval system
