Osmia bicornis bicornis (red mason bee): 114880631
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Entry
114880631 CDS
T06109
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114880631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obb03019
]
114880631
03041 Spliceosome [BR:
obb03041
]
114880631
Messenger RNA biogenesis [BR:
obb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114880631
Spliceosome [BR:
obb03041
]
Complex B
Other components
Prp19-related factors
114880631
Complex C
114880631
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
TPR_10
DHR-2_Lobe_A
PPR
ARM_TT21_C
SNAP
NRDE-2
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
114880631
NCBI-ProteinID:
XP_029052694
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAIRVFRRYLKLAPEDTEEY
IEYLISIGKLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEASKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
MLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNATNPPSDVPLDAMRLLDSKTPSTDNVTTYKDSIKFV
RGVTEKDGKPESQVNNPDEIDIDVDEVNDNEVDIEEDIPVEKQSIPSQVFGSLKTTEGED
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgcaaagatccagaaggaaacttatacgtttttaatgaagaagatttaccg
tatgaagaggaaatcttaagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagcactaaaagtagtaatttaaatattgtatacgagcgtgcgttaaaagaa
cttcctggaagttataagttatggtacaattacctacgtcaacgtgtgagccaattgaag
ggaagatgtataacagatcctctttacgaagatgtaaataatgcattcgaacgtgcatta
gtttttatgcataaaatgcctcgaatttggatggattattgtacattgatgactgaacaa
tgttatattacacgtactcgtcaagtttttgatcgtgcgcttagagctcttcctatcact
cagcaccatcgaatatggccattgtatattgaatttttaaagaaacataatgtatatgag
actgctattagagtttttagaagatatctgaagttagctccggaagacacagaagaatat
attgagtatctaatatcaattggtaaactggacgaagcggctgtaaaactagcacagatt
gttaatcaagatgattttgtatcaaagcatggaaaatcaaaccatcaactgtggaatgaa
ttgtgcgatttaatatcgaagaatccttctaaaataaaatctcttaatgtagatgctatt
atcaggggtggtttaagacgttatactgatcaattagggcctttatggaattctttagca
gactattacgttcgtagtggtttatttgaaagggcaagagacatttacgaggaagcaatt
cagacagtaactactgttagagattttacccaagtttttgatgcttacgcacagtttgaa
gaacttagcctcagtaaacgtatggaagaagcttccaagaatcctactgaagatgatgat
attgatttggaattaagattagcacgattcgaacatttaatggaaagacgtttattatta
cttaattccgtgctattaagacaaaatcctcataacgtgcaagaatggcataaaagggtt
atgctttatgaagggcaaccacacgagattatcaatacgtacacggaagccgtgcaaact
gtgcaaccacaattagcagtaggtaaactgcataccttgtgggttgcgtttggcaaattc
tatgaagaaaatggacaaatagcagatgccagagtagttttcgagaaagccactcacgta
ccttataccaaagtcgatgaccttgcttctgtgtggtgtgaatgggcagagatggaaatt
aggcatggaaattataaagaagctctaaaactaatgcatcgtgccactgctatgccgttc
cgtaaagtagcttatcacgatgaaaccgaaactgtacaaatgagattatacaaatctttg
aaagtatggtctatgtacgccgatctggaagaaagttttggtacatttaagacatgtaaa
gcagtgtacgataaaatcatagacttaaaaattgcgacaccacaaatcattattaattat
ggtctctttttagaggaaaataagtactttgaagaagctttcagggcatacgaaaaggga
atcgcgcttttcaaatggccgaatgtttatgatatatggaatacttatcttactaaattt
ttaaaacgttacggcggcacaaaattggaacgaacacgagatttatttgaacagtgcttg
gaacattgtccaccgaaatacgccaaagctttgtatttattatacgccaaattagaagaa
gaacatggtctagccaggcatgctatgtccgtgtatgaacgtgcgacaagcgctgttctt
ccggaagaaagatttgagatgttcaacatatatatcaagaaagcagcagacatatatggc
gttccaaaaacgagacagatttacgaaaaagccatagaagtacttaacgaagagaatacg
agagaaatgtgcttgcgatttgctgaaatggaaacgaagttgggagaagtcgacagagct
agggcaatatatgcgcattgcagccaaatatgcgatccaagggtaacatcaaatttctgg
caaatatggaaagaattcgaagtgagacacggcaatgaagatacaatgcgtgaaatgctt
cgaattaaacgcagcgttcaagctatgtacaatacccaagtgaacatgatgtctgctcaa
atgttaaacaatgctacgaatccaccatccgatgtaccattagatgcaatgcgacttcta
gatagtaaaacaccaagtacagataacgttactacgtacaaggatagcattaaattcgtt
cgtggtgtaactgaaaaagatggcaaaccggagtctcaagtaaataatccagatgagatt
gatattgacgtagacgaagttaatgacaatgaagttgatatagaagaagatatacctgtc
gagaaacaaagtattccgtcacaagtatttggtagtttaaaaacaactgaaggagaagac
gactaa
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