Osmia bicornis bicornis (red mason bee): 114882961
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Entry
114882961 CDS
T06109
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114882961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obb03019
]
114882961
Enzymes [BR:
obb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114882961
Messenger RNA biogenesis [BR:
obb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114882961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
MG491_central
RNA_bind
PreP_C
DUF4523
Motif
Other DBs
NCBI-GeneID:
114882961
NCBI-ProteinID:
XP_029056010
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MNEVLDENFKEFYPELEKLINNASFIAIDTELTGISTDNDVKYSLFDSLDVRYKKLKNTI
ENFSIIQFGISVFHHVPDMNFYDAQCFNFYLLPRALPLTNNQITWQVGALEFLSKHNFDF
NKLVNHAIPYLNELDEKNFKQYIEKSSFLDKLKHLSYEDETNFNESISKTIDWIFNDVHQ
TSFELEVEDPIVQYLIRKRLKDYNNIQTTSGYKRIIVERISSKNTRDVSEKEDSNCLEQT
LLDSYVGFSKVFKLLCSSKKPIIGHNVLFDLMFTYQQFYKPLPDSYTEFKSNVHSLFPQI
YDTKFISTELRRLYIKEVNWKQSSLDAVYEFFTLKQGKYLALNSPTVNLRLKSLDEKNYH
HAGWDAYFAGYIFIKLGHVFGVKIYGSGLEERPITHSELMSSVKNYVNSVNVSRSNEMCM
KLDGEDPLYSKPEWLHVKLKSASIDTKQLVERLSSFGQVDIMPFARKRVLVAVSNQKSAM
HILQHFQSSKEFQVARYNRIKHAAPSTICLWSGVILSGGLFAWIIKQTLLRST
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttctggatgaaaacttcaaagagttttatcctgaattagagaaacttata
aacaatgcatcctttattgctatcgatacggaattaacgggtataagcacggataatgat
gtgaaatatagtctttttgattctttggacgtgcgctacaagaaattgaagaacaccatt
gaaaacttttcaataattcaatttggcatctcagtgtttcatcatgtccctgacatgaat
ttttatgatgcacagtgtttcaatttttatttactaccacgagctttgccactcacaaac
aaccaaatcacctggcaagtgggtgcattagagttcttgtccaagcacaattttgatttt
aataagcttgtcaatcatgctattccatatctcaatgagttggatgaaaagaatttcaaa
caatacatagaaaagagtagtttcttagataaattgaagcatttgtcgtatgaagatgaa
actaatttcaatgaatctatcagtaaaactatagactggatttttaatgatgtacatcaa
acttcctttgaattggaagttgaggatcctattgtacagtatttaatccgaaaaagatta
aaggattataataacattcaaacaacatctgggtataaaagaataattgttgaaaggata
tcatcaaaaaacacacgtgatgtttcagaaaaggaagatagtaactgcttggagcaaaca
ctgttagattcatatgtaggcttttctaaagtgttcaaactattgtgttcctcaaagaaa
ccaataattggtcataatgtcctttttgatttaatgttcacctatcaacagttctacaaa
ccattgccagactcttatactgaattcaaaagtaacgtacattcgttatttccacaaata
tatgacacaaagttcataagtactgaattgcgaagactgtatataaaagaagtcaactgg
aaacagagttcgttagatgctgtatacgagttttttaccttaaaacagggaaagtatcta
gcgttaaactcaccaactgtgaatttaaggcttaaatctttagacgaaaaaaattatcac
catgcaggatgggatgcttacttcgctggttacatatttataaaattgggccacgtgttt
ggtgtgaaaatatatggaagcggtttagaagaaagaccgataacgcattcggagttgatg
agcagcgtgaagaattatgtaaattccgtaaacgtgtcgagaagcaatgaaatgtgtatg
aaactggacggagaagatccactgtactcgaaaccagagtggcttcacgtgaaattaaaa
tcagcatcgatcgatacgaaacagctggtcgagagactctcatcgtttggccaagtggac
ataatgccattcgcacggaaacgtgttctggtagctgtatcgaatcagaagagcgcgatg
cacatacttcaacactttcagagcagcaaggaattccaagtagcacgctacaatcgtatt
aagcacgcagctcctagcacaatctgcttgtggagcggggtcatcttgtccgggggtttg
tttgcctggatcatcaaacagacgcttctacgttcaacgtga
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