Lacunisphaera limnophila: Verru16b_00449
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Entry
Verru16b_00449 CDS
T04567
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Verru16b_00449 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obg03021
]
Verru16b_00449 (rpoA)
03400 DNA repair and recombination proteins [BR:
obg03400
]
Verru16b_00449 (rpoA)
Enzymes [BR:
obg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Verru16b_00449 (rpoA)
Transcription machinery [BR:
obg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Verru16b_00449 (rpoA)
DNA repair and recombination proteins [BR:
obg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Verru16b_00449 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Endonuc_subdom
Motif
Other DBs
NCBI-ProteinID:
AOS43406
UniProt:
A0A1D8AR89
LinkDB
All DBs
Position
complement(515617..516618)
Genome browser
AA seq
333 aa
AA seq
DB search
MPKRLGKFEIPSKLTKIEEGATSTYAKFIAEPFEAGYGHTIGNSLRRILLSSIEGSAISS
IKIEGVNHEFQSVDGVVEDVTDIVLNLKKVLIVSEKREPVRLSLKVNKEGPVTAADIQAD
ANIKIVNPDQVICTLDKKQAFEAEIEIKTGRGYCPGENNKKEEQAIGVIPIDSLFSPVRL
VRYAVENTRVGQITDYDKLVLEVWTDGRITPDDALKQSASILKHHLDVFDRVSQEAYEFE
SVAAEVSEEQNKLRKLLNMSVNEIELSVRAANCLNNANITTVGELAMKTEQEMLKYRNFG
KKSLNEIKEKLEALGLSLGMKFDERLLDTKKEA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcgtctcggaaaattcgaaattccctccaagctcaccaagatcgaggagggc
gccacgtccacctacgccaagttcatcgccgagccctttgaggccggttatggccacacc
attggcaactccctgcgccgcatcctcctcagctccatcgagggcagcgccatcagctcc
atcaagatcgagggcgtgaaccacgagttccagtccgtcgacggcgtggtcgaggatgtc
accgacatcgtcctcaacctcaagaaggtcctcatcgtctccgagaagcgcgagcccgtg
cgcctgagcctcaaggtgaacaaggaaggcccggtcaccgccgccgacatccaggccgac
gccaacatcaagatcgtcaaccccgaccaggtcatctgcaccctcgacaagaagcaggcc
ttcgaggccgagatcgagatcaagaccggccgcggctactgccccggcgagaacaacaag
aaggaagagcaggccatcggcgtcatcccgatcgactccctcttctccccggttcgcctc
gtccgctacgcggtcgagaacacccgcgtgggccagatcaccgactacgacaagctcgtc
ctcgaggtctggaccgacggccgcatcaccccggacgacgccctcaagcagtccgcctcg
atcctcaagcaccacctcgacgtgttcgaccgcgtctcgcaggaagcctacgagttcgag
agcgtcgccgccgaggtctccgaggagcagaacaagctccgcaagctcctcaacatgtcg
gtcaacgagatcgagctgtccgtccgcgcggcgaactgcttgaacaacgcgaacatcacc
acggtcggcgaactcgccatgaagaccgagcaggagatgctcaagtaccgcaacttcggc
aagaagtccctcaacgagatcaaggaaaagctcgaagccctcggcctgtccctcggcatg
aagttcgacgagcgcctcctcgacacgaagaaggaagcctaa
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