Lacunisphaera limnophila: Verru16b_00480
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Entry
Verru16b_00480 CDS
T04567
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Verru16b_00480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obg03021
]
Verru16b_00480 (rpoC)
03400 DNA repair and recombination proteins [BR:
obg03400
]
Verru16b_00480 (rpoC)
Enzymes [BR:
obg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Verru16b_00480 (rpoC)
Transcription machinery [BR:
obg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Verru16b_00480 (rpoC)
DNA repair and recombination proteins [BR:
obg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Verru16b_00480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF7194
Motif
Other DBs
NCBI-ProteinID:
AOS43437
UniProt:
A0A1D8ARD1
LinkDB
All DBs
Position
complement(535327..539454)
Genome browser
AA seq
1375 aa
AA seq
DB search
MSTEHAREEVRSVLGSDENQFDNVSITVAAPETIRAWSKGEVKNPETINYRTFKPEPGGL
FCQKIFGPVRDYECACGKYKRIKYKDVVCDRCGVEVTIARVRRERMGHIELAVPVAHIWF
LKSMPSRLGLLLDMTARSLERVIYYENYMVTNAGKTPLELKQLLTETEYQQAVDEYGADA
FTAKMGAEAVRDVLTQIDMEAVVAELHETMRATRSKQIKKKLSKRLKVIGGFISSKSRPE
WMVMEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLRNLMQLKTPDVIIHNE
KRMLQEAVDALFDNGRHGRPVTGAGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVI
VIGPELKLNQCGLPKKMALVLFEPFIIRRLKELGFVHTVRGARKMIEKKSPEVWDILEEV
TKGHPVLLNRAPTLHRLSIQAFEPVLIEGSSIRVHPLVCTAYNADFDGDQMAVHVPLSLE
AILECKLLMMSTNNIFSPSSGKPILTPSQDIVLGAYYLSVEPRAKPAKGVRVPLLSGLQE
VQYVKMDGALKVHDWIHVPNPDFGKDTVYGNKERKVLLTTVGRVIFNQIWPAGLGFINFP
VPKGKLGDLILNTYKVAGDRVTVETLDKLKELGFQTAMQAGISIGIDDMIIPENKKEIVA
DARKKVDEVESQYKKGIITSGERYNKIIDIWTGATDRIAKAVFAKLENNDGRTEVNPVYI
MMDSGARGNKQQVRQLCGLRGLMAKPSGEIIERPILSSFREGLTVLEYFISTHGARKGLA
DTALKTADAGYMTRKLCDVAMDVVITEEDCGTRDGIWKKAIFEGETMLVSLAERIVGRFS
ADDVYDPLNPTKTIVGAGELITEELGKRIDDSGIERIKVLSPLTSTSEHGIDAKSYGINP
ATNKVAKIGDSVGIIAAQSIGEPGTQLTMRTFHIGGVASAGSKNPEIKVRNSGIVKYRGL
RLVQTAEGFNIVLNKTGSLQILDDNDRELESYPIVVGTFLSVSDADKVTKGQTIAQWDPY
NIPVLSEKAGTLHFKDMIPGVTVKRELDESTGRIATVVIEHKEDLNPQIEVRDDHGKPVA
AYSIPTGAQVAVAEGDIIQPGALLAKTPRQASVTKDITGGLPRVAELFEARRPKEAAEMA
RIEGVVSFEGSIRGKRKLVVRQEESGAEEEHLIPHGKHIIVQAGDVVHKGQHLTEGSADP
HEILEILGPTALYEFLIGQVQEVYRLQGVSINDKHIEVIIRQMLRKVRISDPGDTEWFWG
EQIDRIAFLRENKRMETAGGKPAEAEPILLGITKASLETESFISAASFQETTRVLTDAST
LGKVDTLKGFKENVIMGHLIPAGTGLPAYKKLKVTLPLGGEIPMDEAPKATAEAS
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaacacgcccgcgaagaagtccgttccgtcctcggttcggacgagaatcag
ttcgacaacgtttcgatcaccgtcgccgcgccggaaaccatccgcgcctggtccaagggt
gaggtcaagaaccccgagaccatcaactaccgcaccttcaagcccgagccgggtggtctt
ttctgtcaaaagatcttcggcccggtgcgtgactacgagtgcgcttgcggcaagtacaag
cgcatcaagtacaaggatgtcgtgtgcgatcgctgcggcgtcgaggtgaccatcgcccgc
gtccgtcgcgagcgcatgggccatatcgagctcgccgtccccgtcgcccacatctggttc
ctcaagagcatgccgagccgccttggcctcctgctcgacatgaccgcccgttcgctcgag
cgcgtcatctactacgagaactacatggtgaccaacgcgggcaagacgccgctcgagctc
aagcagctcctcaccgagaccgagtaccagcaggccgtcgatgagtacggcgccgatgcc
ttcaccgccaagatgggcgccgaggccgtccgcgacgtgctcacccagatcgacatggag
gccgtcgtcgccgagctccacgagacgatgcgcgccacccgctcgaagcagatcaagaag
aagctctcgaagcgtctcaaggtcatcggcggtttcatcagctccaagtcccgtcccgag
tggatggtcatggaagtcctcccggtcatcccgccggacctgcgccccctcgtcccgctc
gagggtggccgcttcgcgacctccgacctcaacgatctctatcgccgcgtcatcaaccgc
aacaaccgtctgcggaacctgatgcagctgaagacgcccgacgtcatcatccacaacgaa
aagcgcatgctccaggaggccgtcgacgctctgttcgacaacggccgccacggccgcccc
gtcacgggcgccggcaatcgcgccctgaagtcgctctccgacatgctcaagggcaagcag
ggccgcttccgccagaacttgctcggcaagcgcgtcgactactccggccgctccgtcatc
gtcatcggtcccgagctcaagctcaaccagtgcggtctgcccaagaagatggcgctcgtg
ctcttcgagccgttcatcatccgccgcctcaaggaactcggcttcgtgcacaccgtccgc
ggtgcccgcaagatgatcgagaagaagtccccggaagtctgggacatcctcgaggaggtc
accaagggccacccggtgctgctcaaccgcgcgccgaccctgcaccgtctctcgatccag
gctttcgagcccgtgctcatcgagggttcctccatccgcgtccaccccctcgtctgtacc
gcctacaacgcggacttcgacggtgaccagatggccgtccacgtgccgctgtccctcgag
gccatcctggagtgcaaactcctgatgatgtccacgaacaacatcttctcgccgtcctcc
ggcaagccgatcctcacgccgtcgcaggacatcgtcctcggcgcctactacctgtccgtc
gagccgcgcgccaagcccgccaagggcgtccgcgtgccgctgctctccggcctccaggaa
gtccagtacgtcaagatggacggcgccctcaaggtgcacgattggatccacgtcccgaac
cccgatttcggcaaggacaccgtctacggcaacaaggagcgcaaggtgcttctcaccacc
gtcggccgcgtgatcttcaaccagatctggcccgccggtctcggtttcatcaacttcccg
gtgccgaagggcaagctgggcgacctcatcctcaacacctacaaggtggcgggtgaccgc
gtcacggtcgagaccctcgacaagctgaaggagctgggcttccagaccgccatgcaggcc
ggtatctctatcggtatcgacgacatgatcatccccgagaacaagaaggagatcgtggcc
gacgcacgcaagaaggtcgacgaggtcgagtcccagtacaagaagggcatcatcacctcc
ggcgagcgctacaacaagatcatcgacatctggaccggcgccaccgaccgcatcgccaag
gcggtcttcgccaagctcgagaacaacgacggccgcaccgaggtgaatccggtttacatc
atgatggattccggcgcccgcggtaacaagcagcaggttcgccagctgtgcggtctccgc
ggcctcatggccaagccctccggcgagatcatcgagcgccccatcctgtcctccttccgc
gagggcctcacggtgctcgagtacttcatctcgacccacggcgcccgcaagggtctcgcc
gacaccgccctcaagaccgccgacgccggctacatgacgcgcaagctgtgcgacgtggcc
atggacgtggtcatcaccgaggaagactgcggcacccgcgacggcatctggaagaaggcg
atcttcgaaggcgaaaccatgctggtctccctcgcggaacgcatcgtgggccggttctcg
gccgacgacgtctacgatcccctcaacccgacgaagaccatcgtcggcgccggcgaactc
atcaccgaggagctgggcaagcggatcgacgactccggcatcgagcgcatcaaggtgctc
tcgccgctcacctccaccagcgagcacggcatcgacgcgaagtcctacggcatcaatccc
gccaccaacaaggtcgcgaagatcggtgactccgtcggcatcatcgccgcccagtccatc
ggcgagcccggcacgcagctcaccatgcgtaccttccacatcggtggcgtcgcttccgcc
ggctcgaagaaccccgagatcaaggtccgcaattccggtatcgtcaaataccgcggcctc
cgtctcgtgcagaccgccgagggcttcaacatcgtcctcaacaagaccggttcgctgcag
atcctcgacgacaacgaccgcgagctggagtcctacccgatcgtggtcggcaccttcctc
tccgtctccgacgccgacaaggtcaccaagggccagaccatcgcccagtgggatccgtac
aacatcccggtcctctccgagaaggccggcacgctccacttcaaggacatgatcccgggt
gtgaccgtgaagcgcgagctcgacgaatccaccggccgcatcgcgaccgtggtcatcgag
cacaaggaagacctcaacccgcagatcgaagttcgcgacgatcacggcaagccggtcgcc
gcttactccatcccgacgggcgcgcaggtcgcggtcgccgagggtgacatcatccagccc
ggtgcgctgctcgccaagaccccgcgtcaggcgtccgtcaccaaggacatcaccggtggt
ctcccccgcgtggccgagcttttcgaagcccgccgcccgaaggaagccgccgagatggcc
cgcatcgagggtgtcgtctccttcgagggctccatccgcggcaagcgcaagctcgtcgtc
cgccaggaagagtccggcgcggaagaggaacacctcatcccgcacggcaagcacatcatc
gtgcaggccggcgacgtcgtccacaagggccagcatctcacggaaggctccgccgatccg
catgagattctggaaatcctcgggccgaccgcgctgtatgagttcctcatcggccaggtg
caggaagtctatcgtctccagggcgtgtcgatcaacgacaagcacatcgaggtcatcatc
cgccagatgctccgcaaggtccgcatcagcgatccgggtgacaccgagtggttctggggc
gagcagatcgaccgcatcgccttcctgcgcgaaaacaagcgcatggagaccgccggcggc
aagccggccgaggccgagccgatcctgctgggcatcaccaaggcctcgctcgagaccgag
agcttcatctcggccgcctccttccaggagacgacccgcgtcctcaccgacgcctcgacg
ctgggcaaggtcgatacgctcaagggcttcaaggaaaacgtcatcatgggtcacctgatc
cctgcgggcaccggactcccggcctacaagaagctcaaggtcacgctgcccctcggcggc
gagatcccgatggacgaggcccccaaggccacggccgaggcgagctaa
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integrated database retrieval system
