Lacunisphaera limnophila: Verru16b_01068
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Entry
Verru16b_01068 CDS
T04567
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
obg
Lacunisphaera limnophila
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
obg03016
]
Verru16b_01068 (rnd)
Enzymes [BR:
obg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Verru16b_01068 (rnd)
Transfer RNA biogenesis [BR:
obg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Verru16b_01068 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AOS44007
UniProt:
A0A1D8ASY1
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All DBs
Position
1259961..1261073
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AA seq
370 aa
AA seq
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MNAQPHYQFINQPAQLPPLLAAIDRSVEIAIDTEADNLFRYKTRVCLLQILAGGEIFLVD
LLADLPLDDLWARLATKPLIMHGSDYDLRLLHGLCAFRPLSLFDTMFAAQLLSIPRFGLA
ALLEQNFGVKLDKDHQKANWSQRPLDRDMLDYAALDVHYLLPLRDRLRDELVRLGRLEWF
EQKCRWQIEVARDGFAPPDENDWRIGGAEKLRGRGLAILHALWHWRESWAEKLNTPPFKV
TGNELLMRLSRAAEEGASPGELLQVHLGRRHDRLAPSLETAIRRGFETDPRTLPRRERRR
DFVPMTPEELSRQDRIKAIRDRLAAGLTLDPTLIATRTQLALLARDPAGAGNVLLPWQAQ
LLTADPAWNS
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgcccaaccgcactaccagttcatcaaccagcctgcgcaactcccgccgctcctc
gcggcgatcgaccgctccgtcgagatcgcgatcgataccgaggccgacaacctcttccgc
tacaagacgcgcgtctgcctcctccagatcctcgccggcggcgagatcttcctcgtggac
ctgctggccgacctgccgctcgacgatctctgggcccgcctcgccaccaagcccctcatc
atgcacggcagcgactacgacctgcgcctgctgcacgggctctgtgccttccggccgctg
agcctcttcgacaccatgttcgccgcccagctgctcagcatcccgcgcttcggcctcgcc
gccctgctcgagcagaatttcggcgtgaaactcgacaaggaccaccagaaggccaactgg
tcccagcgcccgcttgaccgcgacatgctcgattacgccgcgctcgacgtccactacctg
ctccccctgcgcgaccgcctccgtgacgagttggtccgcctcggccgcctcgagtggttc
gagcagaaatgccgctggcagatcgaggtcgcccgcgacggctttgccccgcccgacgag
aacgactggcgcatcggcggcgccgagaaactccgcggccgcggcctggccattctccac
gccctctggcactggcgcgagagctgggccgagaaactcaacacgccccccttcaaggtc
accggcaacgagctgctcatgcgcctgtcccgcgccgctgaggagggcgcgtcgcccggc
gaactgctgcaggtgcacctcggccgccgccacgaccgcctggccccgtccctcgagacc
gcgatccgtcgcggttttgagacggacccccgcacgctgccccgccgcgagcgccgccgc
gacttcgtgcccatgacgccggaggaactctcccgccaggaccgcatcaaggccatccgc
gaccgcctcgccgccggcctcacactcgacccgaccctcatcgccacccgcacgcagctc
gccctgctggcccgcgaccccgccggggccggcaacgtcctcctcccctggcaggcccag
ctcctcaccgccgacccggcctggaattcctga
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