Lacunisphaera limnophila: Verru16b_01788
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Entry
Verru16b_01788 CDS
T04567
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03420
Nucleotide excision repair
obg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Verru16b_01788 (pcrA)
03430 Mismatch repair
Verru16b_01788 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obg03400
]
Verru16b_01788 (pcrA)
Enzymes [BR:
obg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Verru16b_01788 (pcrA)
DNA repair and recombination proteins [BR:
obg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Verru16b_01788 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
Verru16b_01788 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AOS44721
UniProt:
A0A1D8AV12
LinkDB
All DBs
Position
complement(2121233..2123245)
Genome browser
AA seq
670 aa
AA seq
DB search
MDFELDKPNYGQPSVPPIDFRALLNDEQFAAVTAEPGPLLVLAGAGSGKTRTLTYRVAYL
LSQGVRPGEILLLTFTNKAAKEMLHRVHDLTGIEPGRFWGGTFHSLGNRALRMYGEAIGL
PKNFTILDADESETLLKQAVTALDATFFKEKTNPRPGPLFSVLSLARNTQLSLADTVARN
FPQYAEIAHRFPAFAAAYTSKKRDDKVVDYDDLLELWLKLLTDAPDVAAYFNNRFRHVLV
DEYQDTNTIQAQLVDKLAGHHRVMAVGDDAQCIYSWRGADFENIMSFPERHTGTVIHRIE
TNYRSTPEILAFANGVLNCQPKGRHFDKELRAARKHGTKPAVIQAMDDREQAAFVLKRIS
ALVEEEGVSPNEIAILYRSHFLALEMQLALTRAGMPYTITSGVKFFERQHVRDLIAVINF
VYNPANTSAWNRIAILLPKVGEKGASKIYSAALDHAKLMQQNFIDALATDDVLSKVPKDA
KADWPNFCASLRQVYEAMNEDTPADAVSVAIEGWYGDYMKGEYADYTDRLEELKGLVGFA
GQFTQMTDFLAQIMLLNGETSEREIQPDTECIKLTTIHQAKGLEYDVVFLIGAAEGQFPG
YRTIESGDFEEERRLFYVAVTRAKNELYISYPRVASRPGPGGMMLSPSRFLQELPSDLYD
ELRIKRSYGW
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgagctcgataaacccaattacggccaaccctcggtcccccccatcgacttc
cgggccctcctgaacgacgagcagttcgccgccgtgaccgctgagcccggcccgctcctc
gtcctcgccggcgccggctcgggcaagacccgcaccctcacctaccgcgtcgcctacctc
ctttcccagggcgtgcgccccggcgagatcctcctgctcaccttcaccaacaaggccgcc
aaggagatgctccaccgcgtccacgacctcaccggcatcgagcccggtcgcttctggggc
ggcaccttccactccctcggcaaccgcgccctccgcatgtacggcgaggccatcggcctg
ccgaagaacttcaccatcctcgacgccgacgagtccgagaccctcctcaagcaggccgtc
accgccctggacgcgacgttcttcaaggagaagaccaacccccgccccggtccgctgttc
agcgtcctctccctcgcccgcaacacccagctgtcccttgccgacacggtcgcgcgcaac
ttcccccagtacgccgagatcgcgcaccgcttccccgccttcgccgccgcctacacctcg
aagaagcgcgacgacaaggtggtggactacgacgacctgctcgagctctggctcaaactc
ctcaccgacgcccccgacgtcgccgcgtacttcaacaaccgcttccgccacgtcctcgtc
gacgagtaccaggacaccaacacgatccaggcccagctcgtggacaagctggccggacac
caccgagtgatggccgtgggtgacgacgcgcagtgcatctactcgtggcgcggggccgac
ttcgagaacatcatgtcgttccccgaacggcacaccggcacggtcatccaccgcatcgag
actaactaccgctccacgcccgagattctggccttcgccaacggcgtgctcaactgccag
cccaagggccgccacttcgacaaggaactccgcgccgcccgcaagcacggcacgaagccc
gccgtgatccaggccatggatgaccgcgagcaggccgccttcgtgctcaagcgcatctcc
gccctcgtcgaggaggaaggcgtgtcgcccaacgagatcgcgatcctctaccgctcgcac
ttcctcgccctcgagatgcagctcgcgctcacccgcgccggcatgccctacaccatcacc
agcggcgtgaagttcttcgagcgccagcacgtgcgcgacctgatcgccgtcatcaacttc
gtctacaacccggcgaacacctcggcgtggaaccgcatcgccatcctcctgcccaaggtc
ggcgagaagggtgcgagcaagatctacagcgccgccctcgaccacgcgaagctgatgcag
cagaacttcatcgacgccctcgccaccgacgacgtgctcagcaaggtcccgaaggacgcc
aaggccgactggcccaacttctgcgcctcgctccgccaggtctatgaggcgatgaacgag
gacaccccggccgacgccgtctccgtggccatcgagggctggtacggcgactacatgaag
ggcgaatacgccgactacaccgaccgcctcgaggaattgaaaggcctcgtcggcttcgcc
ggccagttcacgcagatgacggacttcctcgcccagatcatgctcctcaacggcgagacc
agcgagcgcgagattcagcccgacaccgagtgcatcaagctcacgacgatccaccaagcc
aagggcctggagtacgacgtcgtcttcctgatcggggccgctgaaggccagttccccgga
taccgcacgatcgaaagcggcgacttcgaggaagagcgccgcctcttctacgtcgccgtc
acgagagccaagaacgagctctacatcagctacccaagagtcgcctcccgacccggcccc
ggagggatgatgctctcgccgtcacgcttcctccaagagctccccagcgacctctacgac
gagcttcgcatcaagcgcagctatggttggtga
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