Lacunisphaera limnophila: Verru16b_02401
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Entry
Verru16b_02401 CDS
T04567
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Verru16b_02401 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obg03019
]
Verru16b_02401 (rhlE_2)
Enzymes [BR:
obg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Verru16b_02401 (rhlE_2)
Messenger RNA biogenesis [BR:
obg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Verru16b_02401 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AOS45321
UniProt:
A0A1D8AWQ8
LinkDB
All DBs
Position
complement(2842121..2843572)
Genome browser
AA seq
483 aa
AA seq
DB search
MPFSKLGLPPSLVNGVKAMGYVDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPVL
ARLGKHEPRGPRVLVLEPTRELAAQVETAFRDFGRFTDIRATVVHGGVGYGRQRSEIQAG
TDIVIATPGRLMDFLNEKTLRLDNLKILILDEVDRMLDMGFVKDVKKIIAMCPRERQTLF
FSATVPPEIEEVARFALRNPARVEIGVSRTVNKSVTHAFYPVPMGLKFDLLVALLEKTDF
QSCLVFSRTKHGADKIARKLKAANHSVAVLHANRSQSQRVEALEGFKSGKYEVMVATDIA
ARGIDVAGVSHVINYDIPANPEDYVHRIGRTGRAMAVGDAFTLTTPDQTGEIRDIERFIG
QKVPQLKLEGFNYAAAPKPAMGFQGAAPAHGQRPAHGHGGGRGGQGGGRGGQGGYGGGRG
HQPAREQKFFQPSSQAQAPAPRPAQPGQFTPQGQAPAPGGGGHGQPPGPRKFGGLSRGRW
NRR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccattttccaagctcgggctgccgccctccctcgtcaacggtgtcaaagccatgggc
tacgttgacccgacgcccatccagctgcgcgccatcccggtcgtgctcggcggcggcgac
ctgatcggctcggcccagaccggcaccggcaagaccgccgccttcgccctccccgtcctc
gcccgcctcggcaagcacgagccccgcggcccgcgcgtcctcgtcctcgagcccacccgc
gaactcgccgctcaggtcgagaccgccttccgcgacttcggccgcttcaccgacatccgc
gccaccgtcgtccacggcggcgtcggctacggccgccagcgcagcgagatccaggcgggc
accgacatcgtcatcgccacgcccggccgcctgatggacttcctcaacgagaagaccctc
cgcctcgacaacctcaagatcctcatcctcgacgaggtcgaccgcatgctcgacatgggc
ttcgtcaaggacgtgaagaagatcatcgcgatgtgcccgcgcgagcgccagacgctgttc
ttctcggccaccgtcccgcccgagatcgaggaggttgcccgcttcgccctgcgcaatccc
gcccgcgtcgagatcggcgtgtcgcgcacggtcaacaagtcggtcacccacgccttctac
ccggtgccgatgggcctcaagttcgacctgctcgtcgccctgctcgagaagaccgacttc
caaagctgtctggtcttctcccgcaccaagcacggcgccgacaagatcgcccgcaagctc
aaggccgccaaccactccgtcgccgtcctccacgccaaccgctcgcagtcgcagcgcgtc
gaagccctcgagggtttcaagtccggcaaatacgaggtaatggtcgccaccgacatcgcc
gcccgtggcatcgacgtcgccggcgtctcgcacgttatcaattacgacatcccggccaac
cccgaggattacgtccaccgcatcggccgcaccggccgcgccatggccgtcggcgacgcc
ttcaccctcaccacgcccgaccagaccggcgagatccgcgacatcgagcgtttcatcggc
cagaaggtcccgcagctcaagctcgagggcttcaactacgccgccgccccgaaacccgcg
atgggtttccagggcgcggcacccgcccacggtcaacgcccggcccacggccacggcggc
ggtcgcgggggccagggtggcggccgcggcggccagggcggttacggcggtggccgcggc
caccagcccgcccgcgagcagaagtttttccagccgtcgagccaggcccaggctcccgcg
cctcgcccggcgcagcccggccagttcacgccgcaaggtcaggcccccgcccccggtggt
ggcggtcacggccagccgcccggcccgcgcaagttcggcggcctctcgcgcggccgctgg
aaccggcgctga
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