Lacunisphaera limnophila: Verru16b_02680
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Entry
Verru16b_02680 CDS
T04567
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03410
Base excision repair
obg03430
Mismatch repair
obg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Verru16b_02680 (recJ)
03430 Mismatch repair
Verru16b_02680 (recJ)
03440 Homologous recombination
Verru16b_02680 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obg03400
]
Verru16b_02680 (recJ)
DNA repair and recombination proteins [BR:
obg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Verru16b_02680 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Verru16b_02680 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Verru16b_02680 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
AOS45597
UniProt:
A0A1D8AXJ7
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All DBs
Position
3168100..3169815
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AA seq
571 aa
AA seq
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MRWNYTPVHAESVGALARSLGTTPVVAELLLRAGVPEAGAVRFLQPTLASLGDPFLVVNL
ERAVDRLLLALQRHERVTVLGDYDVDGVCSTSILVCLLRRLGLTPAYLVPRRAEEGYGLS
ATAIERALEQGCPDLFIALDCGTNSGAEVALLRSRGAEVIIVDHHRSTEPPATDAILINP
HVHPAPDDGAWHYLCTVGLVFKLAHGLLKKLRAENHPVALSIVLKDYLDLVAMGTIADLV
PLHGENRIFARHGLRVLAETRRPGLIALMQVSGLKTDQGLVPTDVSFRLGPRINASGRLA
DAALSVDLLLSADPAFCDATARQLDALNRERQDIERQITERAERYVEEHFQAASGLVLFD
EAWHPGVVGIVAGRISRKYHRPAIVLGNEGELAKGSGRGINGFNLVEILAACADCLDGWG
GHPMAVGVALKKGRLDEFRARFDEVIRTRSDQGAGEPGLELSGWLDATEVTDRLMGELEQ
LHPFGMGNPEPVFGVRGLRLRNRPDVFKEQHFRFSGEDATGRRISGVAWKLADRLPPVGQ
PIEIAVQLNWNHYNGRRTLQMELLDWRVAGT
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggaattacacgccggtccacgccgaaagcgtgggggccctcgcgcgcagcctg
ggcacgaccccggtcgtggccgagctgttgctgcgcgccggggtaccggaggccggggcc
gtgcgcttcctgcagccgaccctcgccagcctcggcgatccgtttctggtggtgaacctg
gagcgggccgtggaccgactgctgctggcgctgcagcgccatgagcgggtgaccgtgctg
ggggattacgacgtggatggggtgtgtagcacctcgatcctggtctgcctgctgcgccgg
ctggggctgacgcccgcctacctggtgccccgccgcgccgaggagggttacggcctgagc
gccaccgcgatcgagcgggcgttggagcagggctgcccggaccttttcatcgcgctggac
tgcggcaccaactcgggcgccgaggtggccttgctccggtcgcgcggcgcggaggtgatc
atcgtggatcaccaccgttcgaccgagcctccggccaccgatgcgatcctgatcaacccg
catgtccaccccgcgccggatgacggggcctggcactacctgtgcaccgtgggcctcgtt
ttcaagctggcccacgggctgctgaagaaactgcgggcggagaaccaccccgtggcgctg
agcatcgtgctcaaggactaccttgacctggtcgcgatggggaccatcgcggacttggtc
ccgctgcacggcgagaaccggatctttgcccgccacggcctgcgtgtactggccgagacc
cgccggccggggctgatcgcgctgatgcaggtttccgggctgaagaccgaccaggggctg
gtgccgaccgatgtctctttccggctcgggccgcgcatcaacgccagcggccgcctggcg
gacgccgcgctctccgtggacctgctgctcagcgccgacccggccttctgcgatgcgacg
gcgcgccagctcgacgcgctgaaccgcgagcggcaggacatcgagcggcagatcacggag
cgcgccgagcgttacgtggaggagcattttcaagcggccagcggactcgtgctgttcgac
gaggcctggcatccgggcgtggtcggcatcgtggccggacggatttcgcgcaagtatcac
cggccggccatcgtgctggggaacgagggggagttggccaagggctccgggcgcgggatc
aacggtttcaacctggtcgagatcctggcggcctgcgcggactgcctcgatggctggggc
gggcacccgatggcggtcggcgtcgcgctcaagaaggggcgattggacgagttccgtgcc
cggtttgacgaggtcatccgcacccgttcggaccagggggcgggggagcccggcctggag
ctgtccggttggctcgacgccaccgaggtcaccgaccggctcatgggcgaattggagcag
ctgcatcccttcggcatgggcaatcccgagccggtcttcggcgtccgcggcctccggttg
cggaaccgcccggacgtgttcaaggaacagcatttccggttttccggcgaggatgccacc
ggccgccggatcagcggcgtcgcgtggaagctcgccgaccgcctgccgcccgtcgggcaa
ccgatcgaaatcgcggtccagctgaactggaaccactacaatggccgccggaccctgcaa
atggagttgctagattggcgggtagccggaacctag
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