Lacunisphaera limnophila: Verru16b_03381
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Entry
Verru16b_03381 CDS
T04567
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
obg
Lacunisphaera limnophila
Pathway
obg02020
Two-component system
obg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Verru16b_03381 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Verru16b_03381 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obg03021
]
Verru16b_03381 (rpoN)
Transcription machinery [BR:
obg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Verru16b_03381 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_IclR
HTH_Tnp_ISL3
HTH_23
Xre-like-HTH
HTH_41
MarR_2
Arg_repressor
HTH_3
LacI
Motif
Other DBs
NCBI-ProteinID:
AOS46281
UniProt:
A0A1D8AZI0
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All DBs
Position
3980199..3981656
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AA seq
485 aa
AA seq
DB search
MSGPGLNQSFQQRQTQQLMLAPQMRQSLKILQVAALDLRATIQEELQANPTLEEMPMDDI
SLEKNATSGDENTGREDDPREEMDFSKDLKMLERIGQDWHDHLSDTGGVRQTTGEEDERR
QHFFDSLTTDTSLQQHLMEQAEMADCSVPAHEALRYLIGSLDDRGYLTATLPDLALLASL
PLSTVQEAAKLLKTFDPPGIGAENLGDCLLIQLNHQGRGKTVAARIVRDHFELLVRRRIP
DLSRKMGLSPEIIQEAIGIIGALDPAPGRRFADDSNRVVVPDVTVENDNGIWIVLLNQDY
IPRLRLSSTYRDLIAKGKLSKQESDYLREKLRSGKFIINAIEQRQRTIERITREIIKHQS
EFFAEGVSKLKPLTMTQIADIIGVHETTVSRALANKYIKTPHGVFEMKFFFTSGYQSDAG
ASVANTSVKEMIADIIAGEDPGAPRSDQEIVGLLQEKGLKIARRTVAKYREELGLLPSNL
RRRYD
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcccaggactcaaccagagcttccaacagcggcagacccagcagctcatgctg
gcgccgcagatgcggcagtcgctcaagatcctccaggtcgccgccctcgacctccgcgcc
accatccaggaggaactccaggccaaccccaccctcgaggagatgccgatggacgacatc
agcctcgagaaaaacgccaccagcggcgacgagaacaccggccgcgaggacgacccgcgc
gaggaaatggacttctccaaggacctcaagatgctcgagcgcatcggccaggactggcac
gaccacctgtccgataccggcggggtccgccagaccaccggcgaggaggacgagcgccgc
cagcacttcttcgattcccttaccaccgacacctcgctgcagcagcacctgatggaacag
gccgagatggccgattgctccgtgccggcccacgaggcgctccgctacctcatcggcagc
ctcgatgaccgcggttacctgaccgccaccctgcccgacctcgccctgctcgccagcctg
cccctcagcaccgtccaggaggccgccaagctgctcaagaccttcgatccgcccggcatc
ggcgccgagaacctcggcgattgcctcctcatccagctcaaccaccagggtcgcggcaag
accgtcgccgcccgcatcgtccgcgaccacttcgagctcctcgtccgccgccgcatcccc
gatctctcccgcaagatgggtctctcccccgagatcatccaggaagccatcggcatcatc
ggcgccctcgacccggccccgggccgccgcttcgccgacgactccaaccgcgtcgtcgtg
cccgatgtcacggtcgagaacgacaacggcatctggatcgtcctcctcaaccaggattac
atcccccgcctccgcctcagcagcacctaccgcgacctcatcgccaagggcaagctgagc
aagcaggagagcgactacctccgcgagaagctccgctccggcaaattcatcatcaacgcc
atcgagcagcgccagcgcaccatcgagcgcatcacccgcgagatcatcaagcaccagagc
gagttcttcgccgagggcgtctcgaagctcaagccgctcacgatgacccagatcgccgac
atcatcggcgttcacgagaccaccgtcagccgcgccctcgccaacaagtacatcaagacc
ccgcacggcgtcttcgagatgaagttcttcttcacctccggctaccagtccgacgccggc
gcctccgtcgccaacaccagcgtgaaggagatgatcgccgacatcatcgccggcgaggac
cccggcgccccccgcagcgaccaggagatcgtcggcctgctccaggaaaagggcctcaag
atcgcccgccgtaccgtcgcgaaataccgcgaggaactcggcctcctccccagcaacctc
cgccgccgctacgactga
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