Octopus bimaculoides (California two-spot octopus): 106868320
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Entry
106868320 CDS
T04127
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19719
collagen type II alpha
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106868320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
obi00536
]
106868320
Glycosaminoglycan binding proteins [BR:
obi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106868320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
106868320
NCBI-ProteinID:
XP_052824382
LinkDB
All DBs
Position
6:22903207..22952781
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AA seq
1303 aa
AA seq
DB search
MSSGRFCIYFLLLLQNAAAAYKQYQNNMQSDKAGTGYARGPNYLQARVGAMGPRGAPGQQ
GPPGPQGLRGPAGEPGEAGPVGRSGIRGPAGPPGSRGVDGDPGRDGNPGARGLPGPPGIR
GTPGIPGLPGPKGHRGFTGFAGKNGNPGLDGPKGAAGNMGPIGLPGGAGARGAPGERGRS
GSSGSPGMRGVDGLPGNSGPPGSVGKQGAPGFPGTPGLKGEAGTHGPKGAVGPQGPRGEN
GVAGSAGEAGASGPHGLPGPSGEKGSRGNPGPTGAPGFPGPRGPTGPVGSPGKKGTKGIR
GEQGTQGYKGQPGSKGPRGPSGDRGAPGPAGSEGKRGIAGAPGPVGGVGPFGERGPPGER
GLSGADGLPGPKGVDGEKGPRGKVGDSGAAGERGRPGAPGLQGPIGVPGMPGADGRAGPP
GPPGAVGNDGNPGEMGAPGIQGLPGSQGPAGGKGEIGSPGPGGKDGSVGQPGLPGDPGQP
GARGPPGPSGLEGEAGERGSPGSDGAPGRQGFPGSQGPPGEPGKAGEPGTIGNTGVPGRN
GPRVSTKRFFLLFTVNIDIMDKPIKYCASQVLMSIKLAGTGAPGPKGTPGESGGQGMIGM
PGPRGAVGSPGPKGEAGDAGAPGFDGEVGRPGRTGHQGEPGLPGPPGPKPEKGARGEPGS
AGDPGQPGAPGDRGGPGLQGEQGLPGLPGPIGPAGPKGPAGDRGIKGEVGGVGPQGNPGR
TGLPGPDGIRGKRGQRGEAGLAGIPGEPGASGLPGLQGPPGPAGSPGETGVPGEIGIKGS
RGEQGYAGRNGDVGPQGFPGIPGGNVGPLGPAGRQGERGLPGIPGVQGERGPKGPLGPHG
DPGDPGQAGRDGNQGPQGLSGPPGTPGIPGEAGQVGNPGPDGEIGISGRPGEQGPSGESG
AVGRPGTVGLPGPQGAPGSAGPSGIRGEKGDIGPTGPAGLAGARGAPGPAGIVGVDGPRG
PSGLKGSKGHRGFTGLSGLPGAKGNDGEIGTPGPPGPPGPMGPDGTRGRPGKDGISGPPG
VNGRPGPRGPPGEEGRMGITGAAGPAGPPGPSGPSAAYSANHINNWFTKGPDPYMQDQNQ
EHSPTVIETLSQLKKTFKELKNPTGTPESPAKTCKDLAEHYPDYQDDFYFIDPNGGTVID
AARVYCKISTKETCVVPSPIKHKKPSEIYAPGEDYLQVTKNEGFSYKADGRQIKMLQVLH
QKASQNVTFHCRNTFAHKNAQTGSTSKGLQFEDYDENTLKSTGIARYSVISDGCQHKTNK
FEKTVIEINLDYPTKLPIRNIQVRDYGKDEQDFFVELGQVCFS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcggacgattttgcatttactttctgctgttgttacagaatgccgccgctgca
tataaacaatatcaaaacaatatgcaaagcgacaaagcaggaactggatatgctcgggga
ccaaactatcttcaagctcgtgtcggagctatgggaccaagaggagcacctggacagcaa
ggacctcccggaccacaaggtttgagaggacctgctggtgaacctggagaagctggaccc
gtcggacgctcaggtatcagaggacccgctggacctcctggatcaagaggagtcgatggt
gacccaggacgtgacggtaaccctggagctagaggtttacccggaccacctggaattcgt
ggaactcccggaatccctggtctcccaggacccaagggacacagaggtttcactggattc
gctggtaagaacggcaatcctggtcttgatggacctaagggagctgctggcaacatggga
ccaatcggtttacccggaggcgctggagcacgtggtgcccctggtgaaagaggacgatct
ggatctagtggatctccaggaatgcgtggcgttgatggattaccaggaaacagtggacca
cccggaagcgttggaaaacagggagcccctggtttccctggaactcctggcctcaagggt
gaagccggtactcatggccctaagggagctgtaggacctcaaggcccacgcggagaaaac
ggagttgccggttccgccggtgaagccggagcctctggacctcatggtctccccggacca
agcggagaaaaaggtagccgtggtaacccaggacctaccggtgcacccggattccccgga
cctcgaggaccaactggacctgttggaagcccaggtaaaaagggaactaaaggtatccgt
ggagaacaaggaactcaaggttacaaaggacaaccaggaagtaaaggaccacgcggcccc
tctggagaccgtggagctcccggacccgctggttctgaaggaaagagaggtattgctggc
gctccaggacccgtcggtggtgttggtccatttggagagcgtggacctccaggagaacga
ggtctttcaggagctgacggacttccaggacccaaaggagttgatggtgaaaaaggacca
cgtggaaaagttggtgacagtggagcagcaggagagagaggacgcccaggtgcccctgga
cttcaaggaccaataggtgttcctggtatgcctggtgctgatggccgtgctggcccacct
ggacctcccggagcagttggaaatgatggcaatcccggtgaaatgggagcaccaggtatt
caaggcctccccggatcccaaggacctgctggaggcaaaggagaaattggttctcctggc
cccggcggcaaagacggttctgttggacaacctggtctccccggtgacccaggacaacca
ggcgctcgtggaccacccggtccttccggattagaaggtgaagctggagagagaggaagc
cctggcagtgatggagctcctggtagacagggattcccaggaagccaaggaccacccgga
gagcctggaaaagctggtgaacctggaacaattggaaacaccggtgttcccggacgaaat
ggacctcgcgtaagtaccaaacgtttttttctcttatttactgttaatatagacattatg
gacaaaccaataaaatattgtgcctctcaagtactgatgtctattaaattggctggaact
ggcgcacccggacctaaaggaacacctggagaatctggtggacaaggaatgatcggtatg
cccggtcccagaggtgcagttggcagcccaggacctaaaggagaagctggtgatgctggc
gctccaggatttgatggtgaagtaggacgacctggacgtactggtcatcaaggtgaacca
ggtcttcccggacctcctggccctaaaccagagaaaggtgctcgcggagaacctggatct
gctggtgaccctggacagcccggtgcccctggtgatagaggaggccctggacttcaaggt
gaacaaggtcttcctggacttcccggacctattggaccagctggacccaaaggacccgca
ggtgatcgtggaataaagggagaagtcggtggtgttggacctcaaggtaacccaggtcgt
accggacttcccggccctgatggaattcgtggaaagcgtggacaacgtggtgaagccggt
cttgctggaatccccggagagcctggagctagtggtcttcccggacttcaaggtccccct
ggtcctgctggaagccctggagaaactggtgttcctggagaaatcggaattaagggttca
cgaggagaacagggatatgctggacgcaacggtgatgtcggacctcaaggtttccccggt
attcccggaggaaacgtaggcccactcggaccagcaggacgtcaaggtgaacgtggtctt
ccaggtattcccggagtacagggagaacgtggacctaagggaccacttggacctcacgga
gatcccggagatcctggacaagctggacgtgatggaaaccaaggcccacaaggtttgtct
ggaccaccaggaacacctggtatccctggagaagccggacaagtaggtaatcctggacct
gatggtgagatcggtattagcggtcgacctggagaacaaggaccttctggtgagtctgga
gcagttggcagacccggcactgtaggactgcctggaccccaaggggcaccaggatccgct
ggaccaagtggaattagaggagagaagggagacattggacccactggaccagctggactt
gccggagctagaggagctcccggacctgccggaattgtcggagtcgatggacctcgtgga
ccatctggtttgaaaggttccaaaggacaccgtggatttactggtctttcaggtttacct
ggcgctaagggaaatgatggagagatcggtactccaggaccaccaggacctcctggaccc
atgggacctgatggaacacgtggacgccccggaaaagacggtatttctggaccaccaggt
gttaacggccgccccggaccccgtggaccacctggagaagaaggacgcatgggtattact
ggagccgctggaccagctggacctcccggaccaagcggaccatctgctgcttactcagcc
aaccacatcaacaactggtttactaagggccctgatccttacatgcaagatcaaaaccag
gaacacagtcctaccgtcattgaaactctcagccaattgaagaaaactttcaaagagtta
aagaatccaacaggcacaccagaatccccagccaagacttgtaaagatcttgccgagcac
tacccagattatcaagatgatttctatttcatcgatcctaatggtggaaccgtaattgat
gccgccagagtttattgtaaaataagcacaaaagaaacctgcgttgttccttcacctata
aagcacaagaaaccaagcgagatctatgcacctggtgaagattacttgcaagtaactaaa
aacgaaggattcagctacaaggctgatggccgtcaaattaagatgttgcaagttttacat
caaaaagcttcacagaacgttactttccattgccgcaatacttttgctcataaaaacgct
cagactggcagtacaagcaaaggtctccaatttgaagattatgatgaaaatacgctaaaa
tccacaggcatcgcacgatactctgttataagtgatggatgtcagcacaagaccaacaag
tttgagaaaactgtgatagaaatcaatcttgactatccaacgaagttgccaatcaggaat
attcaggttcgtgactatggcaaagatgaacaagacttctttgtggaattgggacaagtc
tgctttagctaa
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